Gene detail

Detailed information of g10113.t1 in Montipora capitata

Genomic Location: Sc0000278:83183...101184
NR annotation: XP_029209647.2, electroneutral sodium bicarbonate exchanger 1-like isoform X1 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10113.t1

atgatgtcgatggaatatcggcccagagtgggatcaaagattggtggagatgtagctattgatccacacatgctcgatgtttatcgctctcaagttgaagatgtagacattcaagatcatcgtcaagtgtatgtaggggttcatattcccttacggccacggaaacatcaccaaagacatcatgggcatcacaggcgaaaacacaggcctaatggttcgatcgaattcaagtcggacgattcaggcaatacatcatcatcgctgccaactgataaagtgcgtttcattcttggtggcgaagaaaatgatgagtctcacaaaatgtttacacagctggcacattatcaaaatgagcctgaagaatggaggcaaatggcccgttggcttaagtttgaagaagctgttgaagaaggtggagatcgatggagtaaaccacatgttggaacattgtccctttacagtttgtttgaattaagaagttctctgttacgagggactgtccttctggacatgcatgctagcaatttaacgcaaattgctgatcttgtgcttgatgacatggtaaacaaaaaccatttggatcaaaactgccgacagaaagcacgagagatcctactgaaaaaacatcgccatcaatgcaaacccaaaagttccaaaaagaagacaagcatgagtagctttgggtcatttgcaaagaaagcttcttcagctggcttgagtgaaatgctgaaacgttcagactctactccaaaagcaccagaacagcagaggttagaagtggtaaatgaagttggtggcaaaggtggtgaattccctcaccttccgtcagccgctgatttagtcggaaagcaaaaagacagcgatgccagagaggagattgaaaaggctgactctgatccctgtcttgagtttgacaataatttcatgaagaaaattccaccgggggcacaagcttcaaatgttctggttggagaactagatttcttgaagaagccagtgacagcatttgtgcgccttgagaatgcttgtgtgcttggaaatattaccgaggttcccgttccaacaagatttatctttgtgatgttgggccccccaggaacacctggtcgataccatgaagttggccgtgccatagcaaccttgatgtctgatgagatttttcatgaggtggcttataaagctcagtgtcgtgaagacttgttggccggaattgatgaatttcttatgcaggtcacagttttacctccaggcgagtgggatccatccatcagaattgaacctccagatgctgtgccttcccaggacaaacgtcttgagtctgctaaagcaggagctggtggtggaggagaagaacatgatcctgctggtgacagagaagagcaacttgctaaaactggaagttggcaaagtaactgctaccatgagctgcacatttccctttgccaggagtttggatcctggacaaggttatgtggaggtgtcattgctgatattaagcggcgtgctccgtggtactggagtgattttaaggattcactgaatgctcagtgtattgcttcaattattttcatttactttgcatgtctcacgccgatcatcacatttgggggcctaatgggcacaaaaacaggcaaatacatggcagctatggagcagattttagccggtggtattggaggggtcatgttctcattgtttggtggtcagcctctcattattcttggagccactggccctatgttggtctttgaagaaatcctttacacattttgcgagaattttggcattgactaccttccattccgcttgtggatcgggatctggaccatgctatactgctttattcttgttataacagatgccagtgcctttgtcagatacttcacccgtttcacagaggagtcctttgccactctcattgctctaattttcattgttgagggttttaaaaagttagtgcatgttttggacgacagcccagttaagattggggatgaaaatgggtacatagactggaatgcatgccaatgcattaagaaaggtatgggtgacagtttcactcgcttcaacaacaatactgacatttacctcaatacgccattgggagactgtgagagacttggtggtgagcttgtgggtcaagcctgtcacagtaatgtatttttcctgtctgttatcctttcgctggggacttttgcacttgcatttacactgaaaggattccgcaccagttcttactttccaacaaaggtccgtgcagtaatatctgactttgccattctcattgctatcatggtgatggtgggaatagatcttgcgtttgctgtcaacacaccaaagcttgacattccattgaaattccagccaacagcccatgaaaagaggggctggattgttccaccactgggtaagaatcctgtatggaccattcctgctgcagctattccagctttgcttgctactatcttggttttcatggatcagcagatcacagcactgattgtgaacagacgagaacacaagcttaagaaaggagctggttatcatcttgatctacttcttgttgccatcatcattggtatttgttcattgcttggtttaccgtgggtggtagcagccactgtgctgtctgttggccatgtacagagcttgtttgtggaatcacaatgtacagctcctggtgaaaaaactcagtttcttggtgtaagggaacagcgtgttactggtactttcatattcatccttattggcttgactgttttcattgcaccaatattgaagtttgtccctatgccagttctgtttggacttttcttctacatgggattttctgcacttagaggattacagttttttgaaagaattaaaatcatcttcatgccagtcaagcatcagcctgatctaatgtatttgcgacaagttcctcttaagagaattcacatcttcacatttatccagctgttttgtttggcagtgctctgggccatcaaatctactcctgctgctctcatcttccctgttatggtattgatgttggtcgctgttcgcaaagttatggaaaaaattttcaccctccatgaactcgaggttctggatgacttgatgccggagaacataaagaaacaaaaagcagaactggaagcaaaaaagaagaaagacgacagctttgactatgatgatgacgatggtgatgatgatgcagatggcagaaaggatacgcctggaaaagaattgaatggcactgcgcctcatgtggaagccccgatgaatatcacagaggagatgtgcaaaacatcattgtggaagacatttgtgaaggatggctccaccaaaaagcctcagagtcgtaaaagcaagtctcccgacaaacacaaacacaagcacagacatcaccacaagaacaaacacagcagcagacacagaagagcacgtgatgcagatgatgggcaagaaggactatggatgatgagcaagaaagacggagacgaagatggtgaagtcagtgattcagagttgcagagaaaactatcgacaattagtgaagataaaccaggtgatgtagtcattgatatggatcagattcaggactctctgctggaagaggctgaagaggatgaaactgcagataaggcggatgcagaagccaagtgctaa

Transcript

g10113.t1

ATGATGTCGATGGAATATCGGCCCAGAGTGGGATCAAAGATTGGTGGAGATGTAGCTATTGATCCACACATGCTCGATGTTTATCGCTCTCAAGTTGAAGATGTAGACATTCAAGATCATCGTCAAGTGTATGTAGGGGTTCATATTCCCTTACGGCCACGGAAACATCACCAAAGACATCATGGGCATCACAGGCGAAAACACAGGCCTAATGGTTCGATCGAATTCAAGTCGGACGATTCAGGCAATACATCATCATCGCTGCCAACTGATAAAGTGCGTTTCATTCTTGGTGGCGAAGAAAATGATGAGTCTCACAAAATGTTTACACAGCTGGCACATTATCAAAATGAGCCTGAAGAATGGAGGCAAATGGCCCGTTGGCTTAAGTTTGAAGAAGCTGTTGAAGAAGGTGGAGATCGATGGAGTAAACCACATGTTGGAACATTGTCCCTTTACAGTTTGTTTGAATTAAGAAGTTCTCTGTTACGAGGGACTGTCCTTCTGGACATGCATGCTAGCAATTTAACGCAAATTGCTGATCTTGTGCTTGATGACATGGTAAACAAAAACCATTTGGATCAAAACTGCCGACAGAAAGCACGAGAGATCCTACTGAAAAAACATCGCCATCAATGCAAACCCAAAAGTTCCAAAAAGAAGACAAGCATGAGTAGCTTTGGGTCATTTGCAAAGAAAGCTTCTTCAGCTGGCTTGAGTGAAATGCTGAAACGTTCAGACTCTACTCCAAAAGCACCAGAACAGCAGAGGTTAGAAGTGGTAAATGAAGTTGGTGGCAAAGGTGGTGAATTCCCTCACCTTCCGTCAGCCGCTGATTTAGTCGGAAAGCAAAAAGACAGCGATGCCAGAGAGGAGATTGAAAAGGCTGACTCTGATCCCTGTCTTGAGtttgacAATAATTTCATGAAGAAAATTCCACCGGGGGCACAAGCTTCAAATGTTCTGGTTGGAGAACTAGATTTCTTGAAGAAGCCAGTGACAGCATTTGTGCGCCTTGAGAATGCTTGTGTGCTTGGAAATATTACCGAGGTTCCCGTTCCAACAAGATTTATCTTTGTGATGTTGGGCCCCCCAGGAACACCTGGTCGATACCATGAAGTTGGCCGTGCCATAGCAACCTTGATGTCTGATGAGATTTTTCATGAGGTGGCTTATAAAGCTCAGTGTCGTGAAGACTTGTTGGCCGGAATTGATGAATTTCTTATGCAGGTCACAGTTTTACCTCCAGGCGAGTGGGATCCATCCATCAGAATTGAACCTCCAGATGCTGTGCCTTCCCAGGACAAACGTCTTGAGTCTGCTAAAGCAGGAGCTGGTGGTGGAGGAGAAGAACATGATCCTGCTGGTGACAGAGAAGAGCAACTTGCTAAAACTGGAAGTTGGCAAAGTAACTGCTACCATGAGCTGCACATTTCCCTTTGCCAGGAGTTTGGATCCTGGACAAGGTTATGTGGAGGTGTCATTGCTGATATTAAGCGGCGTGCTCCGTGGTACTGGAGTGATTTTAAGGATTCACTGAATGCTCAGTGTATTGCTTCAATTATTTTCATTTACTTTGCATGTCTCACGCCGATCATCACATTTGGGGGCCTAATGGGCACAAAAACAGGCAAAtacatgGCAGCTATGGAGCAGATTTTAGCCGGTGGTATTGGAGGGGTCATGTTCTCATTGTTTGGTGGTCAGCCTCTCATTATTCTTGGAGCCACTGGCCCTATGTTGGTCTTTGAAGAAATCCTTTACACATTTTGCGAGAATTTTGGCATTGACTACCTTCCATTCCGCTTGTGGATCGGGATCTGGACCATGCTATACTGCTTTATTCTTGTTATAACAGATGCCAGTGCCTTTGTCAGATACTTCACCCGTTTCACAGAGGAGTCCTTTGCCACTCTCATTGCTCTAATTTTCATTGTTGAGGGTTTTAAAAAGTTAGTGCATGTTTTGGACGACAGCCCAGTTAAGATTGGGGATGAAAATGGGTACATAGACTGGAATGCATGCCAATGCATTAAGAAAGGTATGGGTGACAGTTTCACTCGCTTCAACAACAATACTGACATTTACCTCAATACGCCATTGGGAGACTGTGAGAGACTTGGTGGTGAGCTTGTGGGTCAAGCCTGTCACAGTAATGTATTTTTCCTGTCTGTTATCCTTTCGCTGGGGACTTTTGCACTTGCATTTACACTGAAAGGATTCCGCACCAGTTCTTACTTTCCAACAAAGGTCCGTGCAGTAATATCTGACTTTGCCATTCTCATTGCTATCATGGTGATGGTGGGAATAGATCTTGCGTTTGCTGTCAACACACCAAAGCTTGACATTCCATTGAAATTCCAGCCAACAGCCCATGAAAAGAGGGGCTGGATTGTTCCACCACTGGGTAAGAATCCTGTATGGACCATTCCTGCTGCAGCTATTCCAGCTTTGCTTGCTACTATCTTGGTTTTCATGGATCAGCAGATCACAGCACTGATTGTGAACAGACGAGAACACAAGCTTAAGAAAGGAGCTGGTTATCATCTTGATCTACTTCTTGTTGCCATCATCATTGGTATTTGTTCATTGCTTGGTTTACCGTGGGTGGTAGCAGCCACTGTGCTGTCTGTTGGCCATGTACAGAGCTTGTTTGTGGAATCACAATGTACAGCTCCTGGTGAAAAAACTCAGTTTCTTGGTGTAAGGGAACAGCGTGTTACTGGTactttcatattcatccttatTGGCTTGACTGTTTTCATTGCACCAATATTGAAGTTTGTCCCTATGCCAGTTCTGTTTGGACTTTTCTTCTACATGGGATTTTCTGCACTTAGAGGATTACAGttttttgaaagaattaaaaTCATCTTCATGCCAGTCAAGCATCAGCCTGATCTAATGTATTTGCGACAAGTTCCTCTTAAGAGAATTCACATCTTCACATTTATCCAGCTGTTTTGTTTGGCAGTGCTCTGGGCCATCAAATCTACTCCTGCTGCTCTCATCTTCCCTGTTATGGTATTGATGTTGGTCGCTGTTCGCAAAGTTATGGAAAAAATTTTCACCCTCCATGAACTCGAGGTTCTGGATGACTTGATGCCGGAGAacataaagaaacaaaaagcagAACTGGaagcaaaaaagaagaaagacgACAGCTTTGActatgatgatgacgatggtgatgatgatgcaGATGGCAGAAAGGATACGCCTGGAAAAGAATTGAATGGCACTGCGCCTCATGTGGAAGCCCCGATGAATATCACAGAGGAGATGTGCAAAACATCATTGTGGAAGACATTTGTGAAGGATGGCTCCACCAAAAAGCCTCAGAGTCGTAAAAGCAAGTCTCCCGACAAACACAAACACAAGCACAGACATCACCACAAGAACAAACACAGCAGCAGACACAGAAGAGCACGTGATGCAGATGATGGGCAAGAAGGACTATGGATGATGAGCAAGAAAGACGGAGACGAAGATGGTGAAGTCAGTGATTCAGAGTTGCAGAGAAAACTATCGACAATTAGTGAAGATAAACCAGGTGATGTAGTCATTGATATGGATCAGATTCAGGACTCTCTGCTGGAAGAGGCTGAAGAGGATGAAACTGCAGATAAGGCGGATGCAGAAGCCAAGTGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32LP4	Sodium-driven chloride bicarbonate exchanger OS=Bos taurus OX=9913 GN=SLC4A10 PE=2 SV=1
Q6U841	Sodium-driven chloride bicarbonate exchanger OS=Homo sapiens OX=9606 GN=SLC4A10 PE=1 SV=1
Q80ZA5	Sodium-driven chloride bicarbonate exchanger OS=Rattus norvegicus OX=10116 GN=Slc4a10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000860 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07565 all species →	Band_3_cyto	Band 3 cytoplasmic domain	Domain	Interproscan
PF00955 all species →	HCO3_cotransp	HCO3- transporter family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016152 all species →	Homologous_superfamily	Phosphotransferase/anion transporter	Interproscan
IPR003024 all species →	Family	Sodium bicarbonate cotransporter	Interproscan
IPR013769 all species →	Domain	Band 3 cytoplasmic domain	Interproscan
IPR003020 all species →	Family	Bicarbonate transporter, eukaryotic	Interproscan
IPR011531 all species →	Domain	Bicarbonate transporter-like, transmembrane domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11453 all species →	ANION EXCHANGE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005452 all species →	Molecular Function	solute:inorganic anion antiporter activity	Interproscan
GO:0006820 all species →	Biological Process	monoatomic anion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0008509 all species →	Molecular Function	monoatomic anion transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008510 all species →	Molecular Function	sodium:bicarbonate symporter activity	Interproscan
GO:0015701 all species →	Biological Process	bicarbonate transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0050801 all species →	Biological Process	monoatomic ion homeostasis	Interproscan
GO:0051453 all species →	Biological Process	regulation of intracellular pH	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13861	SLC4A10, NCBE; solute carrier family 4 (sodium bicarbonate transporter), member 10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g10113.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

219.2Max TPM

124.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	119.02	214.29
whole organisms · low pH treatment	15	15	132.32	219.20
whole organisms · extra low pH treatment pH treatment	12	12	124.97	214.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	214.29
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	212.82
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	206.44
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	178.03
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	172.07
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	160.26
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	148.49
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	141.33
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	133.65
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	119.09
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	105.23
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	103.64
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	100.32
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	98.08
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	92.07
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	92.02
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	83.31
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	58.68
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	28.72
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	26.74
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	24.22
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	219.20
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	181.22
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	178.81
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	170.31
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	169.00
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	158.48
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	157.10
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	131.20
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	121.87
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	107.39
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	102.60
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	92.83
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	72.22
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	63.51
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	59.06
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	214.44
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	194.33
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	164.93
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	162.01
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	140.16
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	116.58
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	112.93
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	90.54
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	86.40
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	81.32
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	74.03
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	61.92

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.