Gene detail

Detailed information of g1012.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_001641010.2, 39S ribosomal protein L2, mitochondrial [Nematostella vectensis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T653	Large ribosomal subunit protein uL2m OS=Homo sapiens OX=9606 GN=MRPL2 PE=1 SV=2
Q9D773	Large ribosomal subunit protein uL2m OS=Mus musculus OX=10090 GN=Mrpl2 PE=1 SV=1
Q498T4	Large ribosomal subunit protein uL2m OS=Rattus norvegicus OX=10116 GN=Mrpl2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000327 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000340 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000944 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001176 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001201 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0003651 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0006101 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0008806 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0024652 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00535 all species →	Glycos_transf_2	Glycosyl transferase family 2	Family	Interproscan
PF00328 all species →	His_Phos_2	Histidine phosphatase superfamily (branch 2)	Family	Interproscan
PF13456 all species →	RVT_3	Reverse transcriptase-like	Domain	Interproscan
PF03067 all species →	LPMO_10	Lytic polysaccharide mono-oxygenase, cellulose-degrading	Domain	Interproscan
PF00125 all species →	Histone	Core histone H2A/H2B/H3/H4	Domain	Interproscan
PF16211 all species →	Histone_H2A_C	C-terminus of histone H2A	Family	Interproscan
PF00181 all species →	Ribosomal_L2	Ribosomal Proteins L2, RNA binding domain	Domain	Interproscan
PF03947 all species →	Ribosomal_L2_C	Ribosomal Proteins L2, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR039949 all species →	Family	N-alpha-acetyltransferase 40	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR001173 all species →	Domain	Glycosyltransferase 2-like	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR045885 all species →	Domain	N-acetylgalactosaminyltransferase	Interproscan
IPR050645 all species →	Family	Histidine Acid Phosphatase	Interproscan
IPR029033 all species →	Homologous_superfamily	Histidine phosphatase superfamily	Interproscan
IPR033379 all species →	Active_site	Histidine acid phosphatase active site	Interproscan
IPR000560 all species →	Family	Histidine phosphatase superfamily, clade-2	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR052282 all species →	Family	Starch-active lytic polysaccharide monooxygenase	Interproscan
IPR004302 all species →	Domain	Cellulose/chitin-binding protein, N-terminal	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR002119 all species →	Family	Histone H2A	Interproscan
IPR032458 all species →	Conserved_site	Histone H2A conserved site	Interproscan
IPR007125 all species →	Domain	Histone H2A/H2B/H3	Interproscan
IPR032454 all species →	Domain	Histone H2A, C-terminal domain	Interproscan
IPR022666 all species →	Domain	Large ribosomal subunit protein uL2, RNA-binding domain	Interproscan
IPR022669 all species →	Domain	Large ribosomal subunit protein uL2, C-terminal	Interproscan
IPR005880 all species →	Family	Large ribosomal subunit protein uL2, bacterial/organellar-type	Interproscan
IPR002171 all species →	Family	Large ribosomal subunit protein uL2	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR051228 all species →	Family	NADPH Oxidase and PX Domain-Containing	Interproscan
IPR036871 all species →	Homologous_superfamily	PX domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20531 all species →	N-ALPHA-ACETYLTRANSFERASE 40	Interproscan
PTHR11675 all species →	N-ACETYLGALACTOSAMINYLTRANSFERASE	Interproscan
PTHR11567 all species →	ACID PHOSPHATASE-RELATED	Interproscan
PTHR36575 all species →	BINDING PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G14430)-RELATED	Interproscan
PTHR23430 all species →	HISTONE H2A	Interproscan
PTHR13691 all species →	RIBOSOMAL PROTEIN L2	Interproscan
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR15706 all species →	SH3 MULTIPLE DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010485 all species →	Molecular Function	histone H4 acetyltransferase activity	Interproscan
GO:0043998 all species →	Molecular Function	histone H2A acetyltransferase activity	Interproscan
GO:1990189 all species →	Molecular Function	peptide-serine-alpha-N-acetyltransferase activity	Interproscan
GO:0004653 all species →	Molecular Function	polypeptide N-acetylgalactosaminyltransferase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006493 all species →	Biological Process	protein O-linked glycosylation	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0030527 all species →	Molecular Function	structural constituent of chromatin	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0006342 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00710	GALNT; polypeptide N-acetylgalactosaminyltransferase	EC:2.4.1.41	Glycosyltransferases	ko01003	deepkoala
K02886	RP-L2, MRPL2, RML2, rplB; large subunit ribosomal protein L2	-	Ribosome	ko03011	deepkoala
K11251	H2A; histone H2A	-	Exosome	ko04147	deepkoala
K20794	NAA40, NAT4; N-alpha-acetyltransferase 40	EC:2.3.1.257	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.