Gene detail

Detailed information of g10129.t1 in Acropora digitifera

Genomic Location: chr4Alt:33380782...33400646
NR annotation: XP_015765306.1, PREDICTED: DNA-binding protein RFX6-like [Acropora digitifera]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10129.t1

ATGGAAGCAGAGACAATCGAAGAAGAAACGTTGGAAATTATCACCCACGAGGACAGACCCAGTGGCCGTCCCAAAAGAGTTCGAGCAAGAAAGTCTTACTGTGAAGTAGAAACAGATGAAGAATGCAATCCCGAGGAACTTAAACAGCTAAAAGCAAAAGGAGGAAGACGCAAGGAATCGTATTCGTGTATAATGTTGGAGAAGAAACAGAAGCAAATTGCACAGACTCTGATATGGCTCAGCGAAAATTACGAGCTCAAAGACGGAATGTGTCTTCCTCGGTGCGTGATGTACACGCACTATTTGGATTTCTGCAGAAAGGGAAAGCTTTGTCCGGCAGGACCTGCCACATTTGGAAAGATTATTCGCCAGCGATTTCCAAAGTTGACGACTCGAAGACTTGGAACACGGGGACAATCAAAATATCATTATTATGGAATCGTTGTCAAGGAGACATCAGCATATTTCCACGCAGGATATTCCAAGAAGGGTTTGACGAGATTTTCTGGTATGAAAGGAAAGGGAGATGCGAATGGTAATCACAAGAAGTTCTCCCTCAGTTCCAAGTCAGGCACCTTGCTACCAGAATTTCCTAATGCAGCAAACGTACATTTACCAGAAGGAGTATCAATGCATAAGGTGGAGACGTTTATTATGATGTACCGAACACATTGCCAAAGAATGTTGGATACCGTCGTTAGTGCAAACTTCGAAGGAGTTCAAAACTTCATTACACATTTCTGGCAAGGAATGCCAAGTCACATTATTTCAGTTCTGGAGTGTCCTGTTGTGGTTGATATTGTGGCCATTTGTGATTCCATTTCTTATAAGGTTTTGACCGACGTCCTTATCCCCTCAGCAATACAAGATCTTCCTGAGAGTCTCCGAGATGAGATAACTGACTTCGCTGACAATTTAATTGATTGGTTGGATGAGTCGTTGACGAATGTACCTCAATCCCTAAAGGAAGCCAAATTGGAAGTTGCAAGAGCATTCACCCAGGCGTTGAAGAGACAAGTGTGTTTCGTTCACTTGGCTCAGGCTGCACGTTCAGCATTGCTTAGTTATGAGGATGTCTCGCAGATGCTGGGGGACCTAACTAAAATCGATTTTGACCAGATTCTGTCCAAGAGTGTCTTCATTAGTGGAAATTCTGAAGTAGTCCACAAAGCGAAAACATACGTTGAAGAGCTGGAGAGTCTCCTCAGGAAACAGGCACCTTTAGAAGCGTATATAGAATGGCTGGACAGCGTAGTGGACAGATGTGTTATCAAGGAAACAGAAGAGTACATGGCAACTTGTTTTGAAGACAGATCGAGAAAATTCTTAGCCATGTGGTCCTTCATTACAGCTTGTGTCCTTGCTGATTTGACCCTTAGAAGCTCACCCAGTTTTGGAGTATTTCATTTGCTGCACACTGCTTTTGAGGAGTACGTGTTTCTTGTGGTTGAAAATCAAAAGATGTTGGAAATGGACAAAAGACTGAACAATTCTCTGGAAATCCAAATGAAAAAAGAATTTCGGACCTTGATCCCTTCAATAGAGACAGAAACGAACAAGCCAAAGGAAAACCAGCAAATGGAACACGTATCCCGGCAGGAAAAGGAAACAGTGCGTCCAAAAAGGAGGAAAACAAACATAAATCCCGAATCTTCTCTCAATGAGAAAGTATTTCAGCAGTTCAAGCCAAGATTCCACGAAAACACTTATCCAGATGCAGCACAATACATCAACGCATGCACGCCACAGGCTGTTACAATTCCAAGCTGTGAATCTTATCAAACAGCACCACTCAACAGTCCCCCGTCTCACCAGTTCGCGCAGCCTATATCGCTATGCACTACCGCTGATTCTCAATACCCTCCAATGGAAAACCGATCAAGTTTTTCATCCTTCCAGATATCTGGTGCACAACAGCCAGCACGAGATTTTGGCGCTACTGTTCCTGATGTAAACTCCTTCCAAGGTGATTTTATCAATGCCATCGACAAAGCAATTTTCAGCTCTAAGTTGAGTTTCAATATTAACTTGGAGGAGTACATGGGAAATTCATGGGTCCAAACTGAAAACCCAAATTTTCCCGTGTTGAATTCAGTGAACGTTCAACAGCACAACTCTGGAGTCAACGGGGCCATGAATTTCCCAAGGAACGGGCATTTTCCAGTCACCTACGAAAATAGCATACATCCAAATGCCTATTCAAGCAGCTATTCGGCGCCAACAAATTCAGGACCGCAGCAGACCCCGTACCTATCGTCCAACAAGGATGACTACGCTTCTGTTCAAAACATTACAAATATGTACCCAAGGTACAATGTACCAAATTATTTCTACGATAGCATGCGAAGTTTTTCGCAACCTGCTGGAAGTGACATCTTGAATGGGGTGCTATCTGCGCCTGCTAGTTCTTATGGTATGGATGGCTTACCTTTACACGACGTACAGCTTAATAGACTAGGCGTTGGTGCTGTTTAA

Transcript

chr4Alt.g10129.t1

ATTTGCGTCATTTTTCTATTTTTTTTGTTTTCATTTTTTGAAATACGTAAACCCTACTTTCACAAGAACAAATGGAAGCAGAGACAATCGAAGAAGAAACGTTGGAAATTATCACCCACGAGGACAGACCCAGTGGCCGTCCCAAAAGAGTTCGAGCAAGAAAGTCTTACTGTGAAGTAGAAACAGATGAAGAATGCAATCCCGAGGAACTTAAACAGCTAAAAGCAAAAGGAGGAAGACGCAAGGAATCGTATTCGTGTATAATGTTGGAGAAGAAACAGAAGCAAATTGCACAGACTCTGATATGGCTCAGCGAAAATTACGAGCTCAAAGACGGAATGTGTCTTCCTCGGTGCGTGATGTACACGCACTATTTGGATTTCTGCAGAAAGGGAAAGCTTTGTCCGGCAGGACCTGCCACATTTGGAAAGATTATTCGCCAGCGATTTCCAAAGTTGACGACTCGAAGACTTGGAACACGGGGACAATCAAAATATCATTATTATGGAATCGTTGTCAAGGAGACATCAGCATATTTCCACGCAGGATATTCCAAGAAGGGTTTGACGAGATTTTCTGGTATGAAAGGAAAGGGAGATGCGAATGGTAATCACAAGAAGTTCTCCCTCAGTTCCAAGTCAGGCACCTTGCTACCAGAATTTCCTAATGCAGCAAACGTACATTTACCAGAAGGAGTATCAATGCATAAGGTGGAGACGTTTATTATGATGTACCGAACACATTGCCAAAGAATGTTGGATACCGTCGTTAGTGCAAACTTCGAAGGAGTTCAAAACTTCATTACACATTTCTGGCAAGGAATGCCAAGTCACATTATTTCAGTTCTGGAGTGTCCTGTTGTGGTTGATATTGTGGCCATTTGTGATTCCATTTCTTATAAGGTTTTGACCGACGTCCTTATCCCCTCAGCAATACAAGATCTTCCTGAGAGTCTCCGAGATGAGATAACTGACTTCGCTGACAATTTAATTGATTGGTTGGATGAGTCGTTGACGAATGTACCTCAATCCCTAAAGGAAGCCAAATTGGAAGTTGCAAGAGCATTCACCCAGGCGTTGAAGAGACAAGTGTGTTTCGTTCACTTGGCTCAGGCTGCACGTTCAGCATTGCTTAGTTATGAGGATGTCTCGCAGATGCTGGGGGACCTAACTAAAATCGATTTTGACCAGATTCTGTCCAAGAGTGTCTTCATTAGTGGAAATTCTGAAGTAGTCCACAAAGCGAAAACATACGTTGAAGAGCTGGAGAGTCTCCTCAGGAAACAGGCACCTTTAGAAGCGTATATAGAATGGCTGGACAGCGTAGTGGACAGATGTGTTATCAAGGAAACAGAAGAGTACATGGCAACTTGTTTTGAAGACAGATCGAGAAAATTCTTAGCCATGTGGTCCTTCATTACAGCTTGTGTCCTTGCTGATTTGACCCTTAGAAGCTCACCCAGTTTTGGAGTATTTCATTTGCTGCACACTGCTTTTGAGGAGTACGTGTTTCTTGTGGTTGAAAATCAAAAGATGTTGGAAATGGACAAAAGACTGAACAATTCTCTGGAAATCCAAATGAAAAAAGAATTTCGGACCTTGATCCCTTCAATAGAGACAGAAACGAACAAGCCAAAGGAAAACCAGCAAATGGAACACGTATCCCGGCAGGAAAAGGAAACAGTGCGTCCAAAAAGGAGGAAAACAAACATAAATCCCGAATCTTCTCTCAATGAGAAAGTATTTCAGCAGTTCAAGCCAAGATTCCACGAAAACACTTATCCAGATGCAGCACAATACATCAACGCATGCACGCCACAGGCTGTTACAATTCCAAGCTGTGAATCTTATCAAACAGCACCACTCAACAGTCCCCCGTCTCACCAGTTCGCGCAGCCTATATCGCTATGCACTACCGCTGATTCTCAATACCCTCCAATGGAAAACCGATCAAGTTTTTCATCCTTCCAGATATCTGGTGCACAACAGCCAGCACGAGATTTTGGCGCTACTGTTCCTGATGTAAACTCCTTCCAAGGTGATTTTATCAATGCCATCGACAAAGCAATTTTCAGCTCTAAGTTGAGTTTCAATATTAACTTGGAGGAGTACATGGGAAATTCATGGGTCCAAACTGAAAACCCAAATTTTCCCGTGTTGAATTCAGTGAACGTTCAACAGCACAACTCTGGAGTCAACGGGGCCATGAATTTCCCAAGGAACGGGCATTTTCCAGTCACCTACGAAAATAGCATACATCCAAATGCCTATTCAAGCAGCTATTCGGCGCCAACAAATTCAGGACCGCAGCAGACCCCGTACCTATCGTCCAACAAGGATGACTACGCTTCTGTTCAAAACATTACAAATATGTACCCAAGGTACAATGTACCAAATTATTTCTACGATAGCATGCGAAGTTTTTCGCAACCTGCTGGAAGTGACATCTTGAATGGGGTGCTATCTGCGCCTGCTAGTTCTTATGGTATGGATGGCTTACCTTTACACGACGTACAGCTTAATAGACTAGGCGTTGGTGCTGTTTAACGGAATGGAATGATATCGCTATACTTTTCTTATTTTTGTTGTTGAAAATTCAAGTTGGTAACACAGGTTGACCGCCACATAAAAGATATGCTCTTCG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RJA1	DNA-binding protein RFX6 OS=Danio rerio OX=7955 GN=rfx6 PE=2 SV=2
D2HNW6	DNA-binding protein RFX6 OS=Ailuropoda melanoleuca OX=9646 GN=RFX6 PE=3 SV=2
Q8HWS3	DNA-binding protein RFX6 OS=Homo sapiens OX=9606 GN=RFX6 PE=1 SV=2

Gene family

Family type	Membership / link
Transcription factor family	RFX · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02257 all species →	RFX_DNA_binding	RFX DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR039779 all species →	Family	RFX-like DNA-binding protein	Interproscan
IPR003150 all species →	Domain	DNA-binding RFX-type winged-helix domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12619 all species →	RFX TRANSCRIPTION FACTOR FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19521	RFX6; regulatory factor X 6	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.