Gene detail

Detailed information of g10156.t1 in Acropora digitifera

Genomic Location: chr4Alt:33844489...33855019
NR annotation: XP_029181099.1, outer mitochondrial transmembrane helix translocase-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr4Alt.g10156.t1

GCGTACTGTTTTGAGGAAAACCGCGTCCCTGTCACCTTGATAGAATCAAAACGGAAACAAAAACGACGCCGGCCTTTAAAAATTTGACTATATTATGCCGCTAAATAGAGCAAGATATGCAGCCGTGGCGATACAGACCATATTTTTCGGTGTTTTGACTTATTATGGTGTGAAATGGTTAATGGATGCTCTGGATCCGACAAAAAAGTGTCGCTTGGCTGCTCAGAAACAGGCTGAACAACTGTTGAAGAAAATTGGCTTGGAGGGAATCAAGCTAAGTGAATATGAATTGAGTGTTGCAGCTGACATTGTTGATCCCTTGACCCTGCCGATAAGTTGGAAAGACATTGGAGGACTGAGTGGAGTCATTGAAGAAATCCAGGAAACAGTCATTTTGCCAATAAAGCAAAAGGAGTTATTTAAAAACTCCTCTCTTCTCGGGGCACCGAAAGGTGTTTTATTATATGGACCTCCAGGGTGTGGAAAAACATTGCTAGCCAAAGCCACAGCCAGAGAAGCTGGTTGCCGTTTTGTAAACCTTCAAGTTTCTTCTTTAACTGACAAGTGGTATGGTGAATCACAAAAGCTTGCAGCAGCTGTTTTCTCTTTGGCAATCAAACTTCAACCATGTATCATATTTATTGATGAAATAGATTCTTTTCTCAGAATGCGAAACACAACGGACCATGAGGCCACAGCAATGATGAAAGCACAATTTATGACTCTGTGGGATGGTCTGATGACTGATTCTTCCAGTCAGGTTATTGTAATGGGGGCAACAAACAGGCCTCAAGATGTTGACAGGGCAATACTCAGAAGAATGCCTTGTGCATTTCGCGTGGGATTACCTAACTCAGAACAGCGCAGAGAAATCTTGAACATTATTCTGGAAAATGAAAGGCTTGGATATGATGTGGATTTGGATGAATTAGCAGAAATGACAGAAGGGTTTTCTGGAAGTGGCCTTAAAGAAGTCTGTCGTGTGGCAGCGATGTCGTGTGTGAGAGATTATGTGAGAAGCAGAAGCAACTCAGAATCCTCGAGCAGTCCAGCGGATGAAAGTGAAAATGTCAATCTTCGACCAATCACAATGACGGATTTGAAGGCAGGTTTTGAGAAAGCGCTGTCAAGCACAAATTTCCACAGTTGACGACCTTGATCCCTTGTGGTGAAGAATTCTGCATAAGACCAGCAACACAGTTTTCAGTTTATTTGCTCCTGACAAACGCGTCGTCAATCAATTTGGAACCAGCTGTCTTGACATGTAAAGGCTTCCAAATAAGCGTAGGCTTGAGGGATAGTAAGATGAAGCTAGCTGTTACAACGTATGTCAGCATGGTCCCCAATCTCTTCTTAGATAGTGGAGTCTGCTATCCATAGCCTACGTAACAAGCGTTTCCGCTAGTGGAGACTTGTTACAATCGTGTAACAACAACAACAACAATAACAAAAATGGCGCGAGATCTCTCGTCCCATTTTTTGCAAGACCAAAACACGCCTTCACTGAAACTGTTACTACGTGGGCTACCCTATCCTTGGTTTTCTTTAAATTGATTAACGGCAGCCATGTTAGTGGTTTAAAATAGTTAATATAAAAACAGTAAGTGGCCACGTGGTGTGAAAACCCAGAACTGTCTCTAGTCTGGAAATAAAGGTTTTCATGTTGGTTGCAAAGCAGAGTTCCATTTGCGTCTTGAAAGACTGTATTTAGAGTGGTTTCAAATGACTGTCGAAAAACCAATAGAAAAGTAATTACTGATATCAGTCACAACAAGAGCAAGCCGCGCCATGAACCAATCAGAACCGCAAGGAATTGCCTATACTACGCTTGTCCACAAATATCATAGTCATGGTCTTCAAACATTGATTCAGCCTTGAACCCAGGCTCTCTCTTTTCCTCGGAAAACAGAGAAAACTTGGGTTCGAGGTTGACATTGATCCTAGTTCTAGTTCTACTTGAATACTCTTCAACGTTACTTTACTTCAAGAAGAGATGAAAGAATAAAATAATTAAGTAATTAAGAATGTAACTATACTTAAAATAAAACTTAAAATAGTTTTACACAGCAAAATGCTGAATAATTAAGTGATCTAGTTACAGGAGATAAACAGTTCCAGTCCTTTATGGTTCGCGGAAACGAACGATACATATGCTGACAAACGATACATATGCTGTACCTTTGGTTTCTTCAGAGCCAGCAAACATAATAAATGATATTTCTTTGTTGATTGTTCCGCAATTAAATAGACTGGCCAGTCACCTTGAGTTTAATGTCGCATTTTATACAATTTAAAGCCAATTGTAAACATTTACGCAATAAAACCGTTTTTGCAGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F6QV99	Outer mitochondrial transmembrane helix translocase OS=Bos taurus OX=9913 GN=ATAD1 PE=2 SV=2
Q8NBU5	Outer mitochondrial transmembrane helix translocase OS=Homo sapiens OX=9606 GN=ATAD1 PE=1 SV=1
Q9D5T0	Outer mitochondrial transmembrane helix translocase OS=Mus musculus OX=10090 GN=Atad1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051701 all species →	Family	Mitochondrial Outer Membrane Translocase MSP1 Subfamily	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45644 all species →	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0140570 all species →	Biological Process	extraction of mislocalized protein from mitochondrial outer membrane	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22530	ATAD1, MSP1; outer mitochondrial transmembrane helix translocase	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.