Gene detail

Detailed information of g1016.t1 in Acropora digitifera

Genomic Location: chr1Alt:16582115...16601983
NR annotation: XP_044167460.1, fibroblast growth factor receptor 4-like isoform X4 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g1016.t1

ATGGAATGTGTCGCAAAGTATGCTAATTTCTTTACTTGTTCACTGTCTATTTTTTTTTTTTCAGAGACTGCAAACATCACAGCATTCATCACTAACCCTTCAACTCCATCCTATGCAGTGCAAGGACAGAGCTTCACTCTTGAGTGGACCTACACTCTTGATGGTACAGTTGCCTATGCAAAGTTTTCCATTATAACAAGCAGTGGAAGTGAATTACTTATTGGGAGGAAATTTGGACTTGGTGTCATAACCCTTCAGCCAGAGTATCAAGCACAATTTAGGGCACAAGCTACAAACATCAGAGCAGAGCTGAATATTCTTGCAGTGCAAAGAACAGATGAAACAACTTATAAAGTGACTGTTGTTCCAACTGGTGCTGGTTCTCTTGTACAATCAGTGTTTGTTGTAGTCAATTTTCCACCTAACATTACTGAAATCTCTGAAAACCAAACAGTAATTGAAGGAGGGAGCGTAACACTGAAATGCCTAGCTGATGGGAAACCAACACCAAACATTACATGGACGAGACTCACAGATAATAACGTTGTCATCATGACATTGAGTGACATAAGAAGGCAGGACGCTGGAAAGTACAGATGCACAGCTGATAACGGGATTGGAAGCCCTAGGTTTGGAGATGTCTGGATTGTCGTTCAGTTTCCACCAAGCATCATTGGAATAACTGGAAACACGTCGGTCATAGAAGGAGGGAATGTGAACCTGAATTGCTCAGCGAAGGGTAAACCGAAACCACGTATCACATGGACAAGACTCTCTGATAACAGTAATGTCACCATGCCATTAAATAACATCAACAGACATTCTGTAATGGACTACAGATGCACAGCAGAGAATGGAATAGGAACCCCTTCTACTAGAAGGGTTGCCATTGATGTGCAATATCCTGTCAAGGCTACCGGTAGAGGAGAAAATGCCTTTGTGGTTGGAGGGGATGTGAAAACGTTGACATGCCCAGTTGATGGGAACCCGAAGCCCAACATCGAATGGTTCAGTGAAAAAACTGGGAGAAAGATTTCCAGTGGAAAACAATACAAAACAGGAGAAAGTGGGTGCTACACTTGTGTTGCGTGGAGCTCTCTTGGCACACCAGTTAATATCACACAGTGCTTGACTATTGGACAAGAAGTTCGAGTCATCCTGACATTAATAACAAATTTTAAACAAGCATTCGAAGATTTGAACAACGCTTCTTCAAAGCAATTTGTTGCAAAGGTTGAGGAAGAGATAGACAAAGTATACACGAATATGCCAGAGTACATCAGAAGTAAAGTAACACAGCTGAGGCGTGGGAGTGTAATTGTACACTTCAACCTGTACTTTAAGACTGCTGTGGCTCCAGAGAAGGGAATTGAAAACCTGAGGGTTGCTATTTCCGCCAATGGCACTTTTGGGGATTTCCAAGTTGAGAAATTGGTCATTTACTCCAAAAAAAGAACCAACTCCACTACAACAACAGAAAGCAAATGCACTTGCCCTGATAATGAGACCTCATTGTTGGTCATAATAGCAGTTCTTGGAATAGTCATTTTGGTTCTTATTGCAGTTATAATCTGGCAGCAAAGACAGCTAAGGGCCATTGGACACAAAAGTAGGTCGTACGAGGGAGCTGAGGAAAGAGATGCTGGCATTTATGACAACGAAATTGCAATGAAAGATGTGAATCCCACTCACCTTGGATCAAAGAATTCCTTACAACAACAGGTTCCCGATGAACTCGCCTATATGCCTTTACAGGGCATCTGTCCAACTGGAGAAGGGTCTATTAGCTCTGTAAGCCCCGTTCCAAATTTTGAGTATGCACCACTTGATGGAAGAACACGTTCATGGGAAATAGAAAGAAACGACGTGAAAGTAGAGAAGATCATTCGTAAGGGTGCTTTTAGCCAGGTAGCCAAAGGAACGGCAAGGAACCTCCCATTTAGGTCTGGAGCAACAAATGTGGCCATTAAAATGGTGAAAGTAGCTAATGCTGCTGAATCAGATAAGCGAGACTTGAAATCAGAACTGGAACTGATGAAGACTCTTAAGCCGCATCCACATGTTATCAAGCTGCTGGGCTGTGTCACTGAATCTGTATTCATCGAGATCTCTTTTCAGGTCTCACTGAATCCCCGATCCTTACATTTTTTATTCATATGGTCCCTCCTTTTAAACAGGGCTATGATCCCAATTTTCACTCCAAATTAA

Transcript

chr1Alt.g1016.t1

CGTTATTATTCTTCGGCTCTGTTATTAGAATATTCAACTACCTCAGAGAAAATCGTATTGTGGCCAAATTGCCTCGGTCAATAGATCAAGATGCCTATCAAATATTATTTAGGACTGAGAGTGTAATAAATATTTACTCATAATGGAATGTGTCGCAAAGTATGCTAATTTCTTTACTTGTTCACTGTCTATTTTTTTTTTTTCAGAGACTGCAAACATCACAGCATTCATCACTAACCCTTCAACTCCATCCTATGCAGTGCAAGGACAGAGCTTCACTCTTGAGTGGACCTACACTCTTGATGGTACAGTTGCCTATGCAAAGTTTTCCATTATAACAAGCAGTGGAAGTGAATTACTTATTGGGAGGAAATTTGGACTTGGTGTCATAACCCTTCAGCCAGAGTATCAAGCACAATTTAGGGCACAAGCTACAAACATCAGAGCAGAGCTGAATATTCTTGCAGTGCAAAGAACAGATGAAACAACTTATAAAGTGACTGTTGTTCCAACTGGTGCTGGTTCTCTTGTACAATCAGTGTTTGTTGTAGTCAATTTTCCACCTAACATTACTGAAATCTCTGAAAACCAAACAGTAATTGAAGGAGGGAGCGTAACACTGAAATGCCTAGCTGATGGGAAACCAACACCAAACATTACATGGACGAGACTCACAGATAATAACGTTGTCATCATGACATTGAGTGACATAAGAAGGCAGGACGCTGGAAAGTACAGATGCACAGCTGATAACGGGATTGGAAGCCCTAGGTTTGGAGATGTCTGGATTGTCGTTCAGTTTCCACCAAGCATCATTGGAATAACTGGAAACACGTCGGTCATAGAAGGAGGGAATGTGAACCTGAATTGCTCAGCGAAGGGTAAACCGAAACCACGTATCACATGGACAAGACTCTCTGATAACAGTAATGTCACCATGCCATTAAATAACATCAACAGACATTCTGTAATGGACTACAGATGCACAGCAGAGAATGGAATAGGAACCCCTTCTACTAGAAGGGTTGCCATTGATGTGCAATATCCTGTCAAGGCTACCGGTAGAGGAGAAAATGCCTTTGTGGTTGGAGGGGATGTGAAAACGTTGACATGCCCAGTTGATGGGAACCCGAAGCCCAACATCGAATGGTTCAGTGAAAAAACTGGGAGAAAGATTTCCAGTGGAAAACAATACAAAACAGGAGAAAGTGGGTGCTACACTTGTGTTGCGTGGAGCTCTCTTGGCACACCAGTTAATATCACACAGTGCTTGACTATTGGACAAGAAGTTCGAGTCATCCTGACATTAATAACAAATTTTAAACAAGCATTCGAAGATTTGAACAACGCTTCTTCAAAGCAATTTGTTGCAAAGGTTGAGGAAGAGATAGACAAAGTATACACGAATATGCCAGAGTACATCAGAAGTAAAGTAACACAGCTGAGGCGTGGGAGTGTAATTGTACACTTCAACCTGTACTTTAAGACTGCTGTGGCTCCAGAGAAGGGAATTGAAAACCTGAGGGTTGCTATTTCCGCCAATGGCACTTTTGGGGATTTCCAAGTTGAGAAATTGGTCATTTACTCCAAAAAAAGAACCAACTCCACTACAACAACAGAAAGCAAATGCACTTGCCCTGATAATGAGACCTCATTGTTGGTCATAATAGCAGTTCTTGGAATAGTCATTTTGGTTCTTATTGCAGTTATAATCTGGCAGCAAAGACAGCTAAGGGCCATTGGACACAAAAGTAGGTCGTACGAGGGAGCTGAGGAAAGAGATGCTGGCATTTATGACAACGAAATTGCAATGAAAGATGTGAATCCCACTCACCTTGGATCAAAGAATTCCTTACAACAACAGGTTCCCGATGAACTCGCCTATATGCCTTTACAGGGCATCTGTCCAACTGGAGAAGGGTCTATTAGCTCTGTAAGCCCCGTTCCAAATTTTGAGTATGCACCACTTGATGGAAGAACACGTTCATGGGAAATAGAAAGAAACGACGTGAAAGTAGAGAAGATCATTCGTAAGGGTGCTTTTAGCCAGGTAGCCAAAGGAACGGCAAGGAACCTCCCATTTAGGTCTGGAGCAACAAATGTGGCCATTAAAATGGTGAAAGTAGCTAATGCTGCTGAATCAGATAAGCGAGACTTGAAATCAGAACTGGAACTGATGAAGACTCTTAAGCCGCATCCACATGTTATCAAGCTGCTGGGCTGTGTCACTGAATCTGTATTCATCGAGATCTCTTTTCAGGTCTCACTGAATCCCCGATCCTTACATTTTTTATTCATATGGTCCCTCCTTTTAAACAGGGCTATGATCCCAATTTTCACTCCAAATTAATAGGAAAGCGCTTTAGCTTTTAAAGAAGTCTACGACTTAAAGAAGACTGCTAGAGAACGAGTTGGGCAGATCGCAACAAGAGTGCGTCACTTTTTGAAGCAGCTACAGATCTTATTCAAAGGATTATCATTTTCTGAATTTAAAAATTAAGGCTTAATGTGGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q8BLK3	Limbic system-associated membrane protein OS=Mus musculus OX=10090 GN=Lsamp PE=1 SV=1
Q13449	Limbic system-associated membrane protein OS=Homo sapiens OX=9606 GN=LSAMP PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07714 all species →	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050958 all species →	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR001245 all species →	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080 all species →	CONTACTIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007156 all species →	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0008046 all species →	Molecular Function	axon guidance receptor activity	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan
GO:0043025 all species →	Cellular Component	neuronal cell body	Interproscan
GO:0050808 all species →	Biological Process	synapse organization	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g1016.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.