Gene detail

Detailed information of g10188.t1 in Acropora digitifera

Genomic Location: chr4Alt:34238443...34251419
NR annotation: XP_029180721.2, rho GTPase-activating protein 39-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10188.t1

ATGGCTCAGAAGCCTGAGTGGGTGGAGCTAATTGAACCCCGAACAAGGGAGCTCATGTATGCTAATCTCAAGAGTGGACAGGTTCAATGGGAACCACCTACTGGAGTCACAGTCACGAAAGCAAATGACACTCAGTGGTGGGAGCTTTACGACCAGAAGACTCGCCGTTATTATTATTACTGTGCAGGAACAGATACAACAGTGTGGCACAAACCCAAGGATGTGGAGATCATTGCTCTTTCAAAACTACAGACTCTGAAAGCTAGGGAGAAACGCAAGGCAGCAAAGCTGGCCAGGGAAGAGAAGAGGGAAGGTCTTCAGCGTCGTGAAGGATCAGAAAGGCGACATAGAGATGGTAGCCTGAGAAAAGATGGGTTGAGTAAACAGGATGATAGCAGTGGTCGGAAGGATGGTTTTTCGAGGGAAGGTTCCTCATCACGGCGACACGGTAGCAGTCGAGGGAGGAGGGAACAAGCAAGTTTACGAGAGCAAAAGAAATGTGATGCTATGGGGCCAAGCTCTTCTACAAAAGCAGTGGTTCATGTTTCTATGGATGTAGCTGTTGTGGAAAATGGAGTGGACAGCATGCTAGTGAAAGATGAGATTGAAAATGTTGTTGACAAAAGTTGTGAGGAAGTGACTGCAATTGCTAAAGTTCTTGAGGAGAAAGGTGAAAATTTAAAGAGACCGAAATCTCCAGCATTACCAATACCTGACATTCCTGCATCAGATTTATCACCTCCTGAAATACAGGATAAAAAGAGTTATTCAACAGATGAAGAAGGCCAGTTAACACCCTCAGGAACCATGATACGCAATGGGACATTAGATGACAGTGCTGGTGAAGACCATCTGAGTCCACCAGGAACTATAGAGAGAGCGCGGCAAGCAATCGAGAGTGCATCCAGGAGCATTATTGCAAACAGAGCGAAAAAGGATTGGAGTAAAGATGACAATGTTTTTGTTGAGAATGGAAGCTTGAAAGGGCTTAAGAAAGGTCGTGGCAGCAATGTGGATGATTCCTTGAGTTTAAAACTCCGAGCCGGCGGGATGCCGGCCACTACAGCTCGCTTGGTCGAGGCTTGTGCGCCTCCTTGCCTCACTGAGAGTCAGCAAAGTATCCCGCGCACGTTACGCCACCAGAGGCAAGTGAGTGACAGTGTGCTGAAGGATCTGAGACGCGATGATGATGATGATGAGGAGGATGAATTAGAAACAAGGTCAATAGGAACTCCCAGCACGTTGCCACGCCTAAGTCGACCTTCTTCCATAGCTTCACCCGCCAATGGATCCTCAAAGCACAGCACGTTGGAACGTTCACATTCCATCCCTGGCTCCAAACCGCCTTTGATACGTGCTCTAGGTGCTTACGAAGATTATTTCAGCCATCACAAGAAAGGCGTGTTTAGACGGAAAAGGATCTCTTTGGCAAGCATGCTTTCCTGGTCCAAGGTTCCAATCAAGAAGCCGCTGATTCTGATCCAGGACAGGCAACTTAAGAAAGACGCCATCGATATGTTCAAGCTTATTCTCTGTTACATGGGTGATCGTACAATGAAGGGAAAGACGCCAGAAAAGGTAGCACTCGAACTGACTACCAAGGGCTGGAATTCGCCATTGCTGAGAGACGAAATATATCTGCAGATCTGCAAACAGACAACCGACAACTTCAGGCCGGAGAGTTTGCGCTGTGGTTGGGAGCTAATGGCGATCTGTCTGGCTCTTTTTCCCCCATCAACCAAATTCCACTGTTATTTAGAAGGATACATTAACAAACACATTGAAGATGCTAACTGGAAAGAAATACCCGTTACTCAATATGCTCGGCATTGCTCTCTGAGACTGAAGAGAATGGCTAGAACTGGCGCCAAGAGAGGTGTGCGAAAACCAAGTGTTGATGATATTCAACAGGCAAAATCCTCTGTTTTTAGCCCGCCCATGTTTGGGTCAAATTTGGAGGAAATTATGGAGGCACAGGCCAAGCGATTTCCTTCACTTAAGCTACCTTGGATTTTACCCACTCTGGCGGAATCCGTATTGTATCACCAAGGCGCGTCCACGGAAGGCATTTTTAGAGTTCCAGGCGATATTGACATGGTTAACGCTCAAAAACTTAAACTGGAAAGATGGGAGGTACCGACAGAAGTCAGTGACCCCCATGTACCCGCTTCTCTTCTGAAACTTTGGTTCAGGGAACTACACGAACCTCTAATACCGGAGCAATTTTATGAAAAATGTGTCAACAACTGTGATGACCCTACGGTTGCTACTGCTCTTGCGATGTCTCTTCCAGAAGTCAATAGACTTGTGCTCTCTTATCTTATTAGGTTTCTTCAGATATTTTCCCTTCCAAGTACGAGTTCCGTTACCAAGATGGATGTTAATAACTTATCGATGGTTTGGGCACCGAACTGTCTTCGTTGTCCTTCGGATGACCCGAAAGAAATCTTCGAGAATACGAGAAAAGAAATGACTTTTATTCGAACTCTTCTTCGGAACCACGATACAACTTTTATGGAAGGAGTGCGCTGA

Transcript

chr4Alt.g10188.t1

ATGCAACTATGGGGGAATCGTTTTACAGATTTACTTTAAATTTATGGCATAACAGCTGAAGTCAATCGCAGTTCTTGCGCAACAAGAAAAGCATCGATGGCTCAGAAGCCTGAGTGGGTGGAGCTAATTGAACCCCGAACAAGGGAGCTCATGTATGCTAATCTCAAGAGTGGACAGGTTCAATGGGAACCACCTACTGGAGTCACAGTCACGAAAGCAAATGACACTCAGTGGTGGGAGCTTTACGACCAGAAGACTCGCCGTTATTATTATTACTGTGCAGGAACAGATACAACAGTGTGGCACAAACCCAAGGATGTGGAGATCATTGCTCTTTCAAAACTACAGACTCTGAAAGCTAGGGAGAAACGCAAGGCAGCAAAGCTGGCCAGGGAAGAGAAGAGGGAAGGTCTTCAGCGTCGTGAAGGATCAGAAAGGCGACATAGAGATGGTAGCCTGAGAAAAGATGGGTTGAGTAAACAGGATGATAGCAGTGGTCGGAAGGATGGTTTTTCGAGGGAAGGTTCCTCATCACGGCGACACGGTAGCAGTCGAGGGAGGAGGGAACAAGCAAGTTTACGAGAGCAAAAGAAATGTGATGCTATGGGGCCAAGCTCTTCTACAAAAGCAGTGGTTCATGTTTCTATGGATGTAGCTGTTGTGGAAAATGGAGTGGACAGCATGCTAGTGAAAGATGAGATTGAAAATGTTGTTGACAAAAGTTGTGAGGAAGTGACTGCAATTGCTAAAGTTCTTGAGGAGAAAGGTGAAAATTTAAAGAGACCGAAATCTCCAGCATTACCAATACCTGACATTCCTGCATCAGATTTATCACCTCCTGAAATACAGGATAAAAAGAGTTATTCAACAGATGAAGAAGGCCAGTTAACACCCTCAGGAACCATGATACGCAATGGGACATTAGATGACAGTGCTGGTGAAGACCATCTGAGTCCACCAGGAACTATAGAGAGAGCGCGGCAAGCAATCGAGAGTGCATCCAGGAGCATTATTGCAAACAGAGCGAAAAAGGATTGGAGTAAAGATGACAATGTTTTTGTTGAGAATGGAAGCTTGAAAGGGCTTAAGAAAGGTCGTGGCAGCAATGTGGATGATTCCTTGAGTTTAAAACTCCGAGCCGGCGGGATGCCGGCCACTACAGCTCGCTTGGTCGAGGCTTGTGCGCCTCCTTGCCTCACTGAGAGTCAGCAAAGTATCCCGCGCACGTTACGCCACCAGAGGCAAGTGAGTGACAGTGTGCTGAAGGATCTGAGACGCGATGATGATGATGATGAGGAGGATGAATTAGAAACAAGGTCAATAGGAACTCCCAGCACGTTGCCACGCCTAAGTCGACCTTCTTCCATAGCTTCACCCGCCAATGGATCCTCAAAGCACAGCACGTTGGAACGTTCACATTCCATCCCTGGCTCCAAACCGCCTTTGATACGTGCTCTAGGTGCTTACGAAGATTATTTCAGCCATCACAAGAAAGGCGTGTTTAGACGGAAAAGGATCTCTTTGGCAAGCATGCTTTCCTGGTCCAAGGTTCCAATCAAGAAGCCGCTGATTCTGATCCAGGACAGGCAACTTAAGAAAGACGCCATCGATATGTTCAAGCTTATTCTCTGTTACATGGGTGATCGTACAATGAAGGGAAAGACGCCAGAAAAGGTAGCACTCGAACTGACTACCAAGGGCTGGAATTCGCCATTGCTGAGAGACGAAATATATCTGCAGATCTGCAAACAGACAACCGACAACTTCAGGCCGGAGAGTTTGCGCTGTGGTTGGGAGCTAATGGCGATCTGTCTGGCTCTTTTTCCCCCATCAACCAAATTCCACTGTTATTTAGAAGGATACATTAACAAACACATTGAAGATGCTAACTGGAAAGAAATACCCGTTACTCAATATGCTCGGCATTGCTCTCTGAGACTGAAGAGAATGGCTAGAACTGGCGCCAAGAGAGGTGTGCGAAAACCAAGTGTTGATGATATTCAACAGGCAAAATCCTCTGTTTTTAGCCCGCCCATGTTTGGGTCAAATTTGGAGGAAATTATGGAGGCACAGGCCAAGCGATTTCCTTCACTTAAGCTACCTTGGATTTTACCCACTCTGGCGGAATCCGTATTGTATCACCAAGGCGCGTCCACGGAAGGCATTTTTAGAGTTCCAGGCGATATTGACATGGTTAACGCTCAAAAACTTAAACTGGAAAGATGGGAGGTACCGACAGAAGTCAGTGACCCCCATGTACCCGCTTCTCTTCTGAAACTTTGGTTCAGGGAACTACACGAACCTCTAATACCGGAGCAATTTTATGAAAAATGTGTCAACAACTGTGATGACCCTACGGTTGCTACTGCTCTTGCGATGTCTCTTCCAGAAGTCAATAGACTTGTGCTCTCTTATCTTATTAGGTTTCTTCAGATATTTTCCCTTCCAAGTACGAGTTCCGTTACCAAGATGGATGTTAATAACTTATCGATGGTTTGGGCACCGAACTGTCTTCGTTGTCCTTCGGATGACCCGAAAGAAATCTTCGAGAATACGAGAAAAGAAATGACTTTTATTCGAACTCTTCTTCGGAACCACGATACAACTTTTATGGAAGGAGTGCGCTGACAGTCAAGAGTCTTGGAATTTAATTCTGAGCCAAGAACAATAATCCTCAGTGATTAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9C0H5	Rho GTPase-activating protein 39 OS=Homo sapiens OX=9606 GN=ARHGAP39 PE=1 SV=2
P59281	Rho GTPase-activating protein 39 OS=Mus musculus OX=10090 GN=Arhgap39 PE=1 SV=2
P18890	Rho GTPase-activating protein 39 (Fragment) OS=Rattus norvegicus OX=10116 GN=Arhgap39 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00784 all species →	MyTH4	MyTH4 domain	Family	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000857 all species →	Domain	MyTH4 domain	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR038185 all species →	Homologous_superfamily	MyTH4 domain superfamily	Interproscan
IPR001202 all species →	Domain	WW domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45876 all species →	FI04035P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20649	ARHGAP39; Rho GTPase-activating protein 39	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.