Detailed information of g1019.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NBT87613.1, NADP-specific glutamate dehydrogenase [Flavobacteriaceae bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P94598Glutamate dehydrogenase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=gdhA PE=3 SV=2
P28724NADP-specific glutamate dehydrogenase OS=Giardia intestinalis OX=5741 PE=2 SV=1
P95544NAD(P)-specific glutamate dehydrogenase OS=Xylanibacter ruminicola OX=839 GN=gdhA PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13613HTH_Tnp_4Helix-turn-helix of DDE superfamily endonucleaseDomainInterproscan
PF01409tRNA-synt_2dtRNA synthetases class II core domain (F)DomainInterproscan
PF13359DDE_Tnp_4DDE superfamily endonucleaseDomainInterproscan
PF000017tm_17 transmembrane receptor (rhodopsin family)FamilyInterproscan
PF12832MFS_1_likeMFS_1 like familyFamilyInterproscan
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan
PF03725RNase_PH_C3' exoribonuclease family, domain 2DomainInterproscan
PF02046COX6ACytochrome c oxidase subunit VIaFamilyInterproscan
PF00208ELFV_dehydrogGlutamate/Leucine/Phenylalanine/Valine dehydrogenaseDomainInterproscan
PF02812ELFV_dehydrog_NGlu/Leu/Phe/Val dehydrogenase, dimerisation domainDomainInterproscan
PF08725Integrin_b_cytIntegrin beta cytoplasmic domainDomainInterproscan
PF07974EGF_2EGF-like domainDomainInterproscan
PF07965Integrin_B_tailIntegrin beta tail domainDomainInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan
PF17855MCM_lidMCM AAA-lid domainDomainInterproscan
PF00493MCMMCM P-loop domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045864Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR027805DomainTransposase, Helix-turn-helix domainInterproscan
IPR002319DomainPhenylalanyl-tRNA synthetaseInterproscan
IPR027806DomainHarbinger transposase-derived nuclease domainInterproscan
IPR000276FamilyG protein-coupled receptor, rhodopsin-likeInterproscan
IPR017452DomainGPCR, rhodopsin-like, 7TMInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR000009FamilyProtein phosphatase 2A regulatory subunit PR55Interproscan
IPR018067Conserved_siteProtein phosphatase 2A regulatory subunit PR55, conserved siteInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR024989DomainMajor facilitator superfamily associated domainInterproscan
IPR051717FamilyMajor facilitator superfamily MFSD6Interproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR050080FamilyRibonuclease PHInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR018336Conserved_siteRibonuclease PH, conserved siteInterproscan
IPR002381FamilyRibonuclease PH, bacterial-typeInterproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan
IPR036345Homologous_superfamilyExoribonuclease, PH domain 2 superfamilyInterproscan
IPR015847DomainExoribonuclease, phosphorolytic domain 2Interproscan
IPR050927FamilyTransient receptor potential cation channel MInterproscan
IPR036418Homologous_superfamilyCytochrome c oxidase, subunit VIa superfamilyInterproscan
IPR001349FamilyCytochrome c oxidase, subunit VIaInterproscan
IPR018507Conserved_siteCytochrome c oxidase, subunit VIa, conserved siteInterproscan
IPR050724FamilyGlutamate/Leucine/Phenylalanine/Valine dehydrogenasesInterproscan
IPR046346Homologous_superfamilyAminoacid dehydrogenase-like, N-terminal domain superfamilyInterproscan
IPR006095FamilyGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenaseInterproscan
IPR006096DomainGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminalInterproscan
IPR033524Active_siteLeu/Phe/Val dehydrogenases active siteInterproscan
IPR014362FamilyGlutamate dehydrogenaseInterproscan
IPR006097DomainGlutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domainInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR033922DomainNAD(P) binding domain of glutamate dehydrogenaseInterproscan
IPR015812FamilyIntegrin beta subunitInterproscan
IPR012896DomainIntegrin beta subunit, tailInterproscan
IPR014836DomainIntegrin beta subunit, cytoplasmic domainInterproscan
IPR036349Homologous_superfamilyIntegrin beta tail domain superfamilyInterproscan
IPR013111DomainEGF-like domain, extracellularInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan
IPR031327FamilyMini-chromosome maintenance proteinInterproscan
IPR041562DomainMCM, AAA-lid domainInterproscan
IPR001208DomainMCM domainInterproscan
IPR008048FamilyDNA replication licensing factor Mcm5Interproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR018525Conserved_siteMini-chromosome maintenance, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR36970UNNAMED PRODUCTInterproscan
PTHR23080THAP DOMAIN PROTEINInterproscan
PTHR24243G-PROTEIN COUPLED RECEPTORInterproscan
PTHR11871PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT BInterproscan
PTHR16172UNCHARACTERIZEDInterproscan
PTHR11953EXOSOME COMPLEX COMPONENTInterproscan
PTHR13800TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6Interproscan
PTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAInterproscan
PTHR43571NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATEDInterproscan
PTHR10082INTEGRIN BETA SUBUNITInterproscan
PTHR11630DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000049Molecular FunctiontRNA bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0043039Biological ProcesstRNA aminoacylationInterproscan
GO:0004930Molecular FunctionG protein-coupled receptor activityInterproscan
GO:0007186Biological ProcessG protein-coupled receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000159Cellular Componentprotein phosphatase type 2A complexInterproscan
GO:0019888Molecular Functionprotein phosphatase regulator activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0016075Biological ProcessrRNA catabolic processInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0009022Molecular FunctiontRNA nucleotidyltransferase activityInterproscan
GO:0005261Molecular Functionmonoatomic cation channel activityInterproscan
GO:0005887Cellular Componentplasma membraneInterproscan
GO:0070838Biological Processmetal ion transportInterproscan
GO:0098655Biological Processmonoatomic cation transmembrane transportInterproscan
GO:0005743Cellular Componentmitochondrial inner membraneInterproscan
GO:0005751Cellular Componentobsolete mitochondrial respiratory chain complex IVInterproscan
GO:0006123Biological Processmitochondrial electron transport, cytochrome c to oxygenInterproscan
GO:0030234Molecular Functionenzyme regulator activityInterproscan
GO:0004354Molecular Functionglutamate dehydrogenase (NADP+) activityInterproscan
GO:0006537Biological Processglutamate biosynthetic processInterproscan
GO:0006520Biological Processamino acid metabolic processInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0016639Molecular Functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptorInterproscan
GO:0005178Molecular Functionintegrin bindingInterproscan
GO:0005925Cellular Componentfocal adhesionInterproscan
GO:0007160Biological Processcell-matrix adhesionInterproscan
GO:0007229Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0008305Cellular Componentintegrin complexInterproscan
GO:0009986Cellular Componentcell surfaceInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0033627Biological Processcell adhesion mediated by integrinInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0000727Biological Processdouble-strand break repair via break-induced replicationInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003697Molecular Functionsingle-stranded DNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006270Biological ProcessDNA replication initiationInterproscan
GO:0017116Molecular Functionsingle-stranded DNA helicase activityInterproscan
GO:0032508Biological ProcessDNA duplex unwindingInterproscan
GO:0042555Cellular ComponentMCM complexInterproscan
GO:0043138Molecular Function3'-5' DNA helicase activityInterproscan
GO:0003688Molecular FunctionDNA replication origin bindingInterproscan
GO:0006260Biological ProcessDNA replicationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K04354PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B-Arginine biosynthesisko00220deepkoala
Transfer RNA biogenesisko03016deepkoala
Chromosome and associated proteinsko03036deepkoala
Chromosome and associated proteinsko03036deepkoala

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