Gene detail

Detailed information of g10195.t1 in Montipora capitata

Genomic Location: Sc0000281:306832...313308
NR annotation: XP_029193547.2, uncharacterized protein LOC114959614 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10195.t1

atggtgcaaaatttcgtagagtttgtcttgttaaagagtaatatagaaaaaaaattttctgtcgtggaaaaacgcgttagttcgctgttcgatgttcagctgaagagaagcaaagaagaagatagtcttcgttgctgggtaaaactcgaaggaaaccagtatgacattgctcgcgcaaaggactacattatcgctgtttgttcgacctgttcatcgacgttttcactagaagaggcaattttgaacgaaaacaacaatacgtcacaatttgacagagcgtcgacgaaagaaattccatctgcgcttcaactgttgtgcaaacaacagcaagaccttactggagaggaatcgttgcaaccgaagtcaaatctacgagacccaagcggcgaacttatttcaagactcgaagaagatgtgacaccgggcagacaggaatgtgcttatacagcaaacaataaatctgcaaaacaagagcgtcaggtcgacggcatggttgttaaaaatgaagtaaatgttagcgacgaacagaaaagtaaccctggagtcgcaagcaaggaaaaagtacaggaagccagcgatgaatctctacgagacttcgccctgaaactcggctattctgaatccattatcaacacaggtttgagcaagcttggaccttcggcagacgaaaattcactactttcagaattggtgaaagcaaaatcatccgtaaaacaactagaggagggatcgtccactttctctgggcacgaaaaacctcatcctgtgcccgacgactggacctgccttcgacccatcgtcatcgatggcagcaatgttgccatgagtcatggcaagcagagagtgttctcctgtcgtggtattggaattgcagtagactggttcttacggagaaaccatcgcaacatcaaagtctttgtacctatgtggaggtctaaggcatcaaggccggagtcaccaattattgaccaagaagtgttaaaaagactggaggaagatggaattcttgtttggaccccaagtggggagaaagagaatggtcaggtgatcaactgctatgatgatcgatacatcatcaagcatgcaacagaaaatgatggcatcatagtttccaatgattacttcagagacctgatgccagaaaacgcagaatggaaaaaggtgattgaccagcgacgtcttatgtacacctttgttgatgataagtttatgccacctgatgaccctaagggccggttcggcccaacactagatgaatatctgaagaaaggatgcggaaagttgtgtccatatgaacgcaactgtacttatggtaataggtgtaagtaccttcatcctgagaggaacccaaagaaagttgaagcagattctgcaccaccctcccctgaaaatttcccccctgaagtaccctatggtaaggtctcaggaccaagcaggccactgcctccatgtccttcaggtgtacgacaacatccaaggccattaccacctgctccacgagagtaccacaaaccactgccgctgcctccacaaggagaaattccagcacacatggccagggtgtttcctcctacccttcgcacaggccagacagttggtataggggagaggaggtccgatccattaccatattgcaaggagttgccttgtgatgtgcagttaatgcgggagcagtttgagcggactcttagtgatccatgcttccaagatcaggcttgtggtggtgtgccacgtggtccattggcacgccgcggtagtgtaccgcaagttccttatgtcacacagccattcccaagtaggccaccagaattaatgattcaaggctcagtgatggtccgtggaattccaagtgatagctgcatggtcagtggtgactggatgctgcaacaggagcagcgtgtgtttggtagacagcagtatcagcagttcccaccaaactttcaacctaataggcctgtccacccagcggcaataccacagaatacctggggaattgcttcatacccccatgaccagcctcactacccccaagcacctcaggcacattatcagtacaactctggtccattccttccgggttatggaagaacgtcttatcatggccaaggcaacagttattttagatcacgtgctcctccaatcattgatgggtggtgtggtgatgtggctgatggccctaaagacgggaactcctcatcagataaagatttagagaggttaaggatagaagcttacgaaaagctttctgaaatttttccaaatgatgtagagaaggtcctggcagtactagataaatattgtgatgaaacaaacattgaatcattgacccaacatatgttggaggatcaagacaactgttag

Transcript

g10195.t1

ATGGTGCAAAATTTCGTAGAGTTTGTCTTGTTAAAGAGTaatatagaaaaaaaattttctgtCGTGGAAAAACGCGTTAGTTCGCTGTTCGATGTTCAGCTGAAGAGAAGCAAAGAAGAAGATAGTCTTCGTTGCTGGGTAAAACTCGAAGGAAACCAGTATGACATTGCTCGCGCAAAGGACTACATTATCGCTGTTTGTTCGACCTGTTCATCGACGTTTTCACTAGAAGAGGCAATTTTGAACGAAAACAACAATACGTCACAATTTGACAGAGCGTCGACGAAAGAAATTCCATCTGCGCTTCAACTGTTGTGCAAACAACAGCAAGACCTTACTGGAGAGGAATCGTTGCAACCGAAGTCAAATCTACGAGACCCAAGCGGCGAACTTATTTCAAGACTCGAAGAAGATGTGACACCGGGCAGACAGGAATGTGCTTATACAGCAAACAATAAATCTGCAAAACAAGAGCGTCAGGTCGACGGCATGGTTGTTAAAAATGAAGTAAATGTTAGCGACGAACAGAAAAGTAACCCTGGAGTCGCAAGCAAGGAAAAAGTACAGGAAGCCAGCGATGAATCTCTACGAGACTTCGCCCTGAAACTCGGCTATTCTGAATCCATTATCAACACAGGTTTGAGCAAGCTTGGACCTTCGGCAGACGAAAATTCACTACTTTCAGAATTGGTGAAAGCAAAATCATCCGTAAAACAACTAGAGGAGGGATCGTCCACTTTCTCTGGGCACGAAAAACCTCATCCTGTGCCCGACGACTGGACCTGCCTTCGACCCATCGTCATCGATGGCAGCAATGTTGCCATGAGTCATGGCAAGCAGAGAGTGTTCTCCTGTCGTGGTATTGGAATTGCAGTAGACTGGTTCTTACGGAGAAACCATCGCAACATCAAAGTCTTTGTACCTATGTGGAGGTCTAAGGCATCAAGGCCGGAGTCACCAATTATTGACCAAGAAGTGTTAAAAAGACTGGAGGAAGATGGAATTCTTGTTTGGACCCCAAGTGGGGAGAAAGAGAATGGTCAGGTGATCAACTGCTATGATGATCGATACATCATCAAGCATGCAACAGAAAATGATGGCATCATAGTTTCCAATGATTACTTCAGAGACCTGATGCCAGAAAACGCAGAATGGAAAAAGGTGATTGACCAGCGACGTCTTATGTACACCTTTGTTGATGATAAGTTTATGCCACCTGATGACCCTAAGGGCCGGTTCGGCCCAACACTAGATGAATATCTGAAGAAAGGATGCGGAAAGTTGTGTCCATATGAACGCAACTGTACTTATGGTAATAGGTGTAAGTACCTTCATCCTGAGAGGAACCCAAAGAAAGTTGAAGCAGATTCTGCACCACCCTCCCCTGAAAATTTCCCCCCTGAAGTACCCTATGGTAAGGTCTCAGGACCAAGCAGGCCACTGCCTCCATGTCCTTCAGGTGTACGACAACATCCAAGGCCATTACCACCTGCTCCACGAGAGTACCACAAACCACTGCCGCTGCCTCCACAAGGAGAAATTCCAGCACACATGGCCAGGGTGTTTCCTCCTACCCTTCGCACAGGCCAGACAGTTGGTATAGGGGAGAGGAGGTCCGATCCATTACCATATTGCAAGGAGTTGCCTTGTGATGTGCAGTTAATGCGGGAGCAGTTTGAGCGGACTCTTAGTGATCCATGCTTCCAAGATCAGGCTTGTGGTGGTGTGCCACGTGGTCCATTGGCACGCCGCGGTAGTGTACCGCAAGTTCCTTATGTCACACAGCCATTCCCAAGTAGGCCACCAGAATTAATGATTCAAGGCTCAGTGATGGTCCGTGGAATTCCAAGTGATAGCTGCATGGTCAGTGGTGACTGGATGCTGCAACAGGAGCAGCGTGTGTTTGGTAGACAGCAGTATCAGCAGTTCCCACCAAACTTTCAACCTAATAGGCCTGTCCACCCAGCGGCAATACCACAGAATACCTGGGGAATTGCTTCATACCCCCATGACCAGCCTCACTACCCCCAAGCACCTCAGGCACATTATCAGTACAACTCTGGTCCATTCCTTCCGGGTTATGGAAGAACGTCTTATCATGGCCAAGGCAACAGTTATTTTAGATCACGTGCTCCTCCAATCATTGATGGGTGGTGTGGTGATGTGGCTGATGGCCCTAAAGACGGGAACTCCTCATCAGATAAAGATTTAGAGAGGTTAAGGATAGAAGCTTACGAAAAGCTTTCTGAAATTTTTCCAAATGATGTAGAGAAGGTCCTGGCAGTACTAGATAAATATTGTGATGAAACAAACATTGAATCATTGACCCAACATATGTTGGAGGATCAAGACAACTGTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5D1E8	Endoribonuclease ZC3H12A OS=Homo sapiens OX=9606 GN=ZC3H12A PE=1 SV=1
A0JPN4	Endoribonuclease ZC3H12A OS=Rattus norvegicus OX=10116 GN=Zc3h12a PE=2 SV=1
Q5D1E7	Endoribonuclease ZC3H12A OS=Mus musculus OX=10090 GN=Zc3h12a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001622 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18039 all species →	UBA_6	UBA-like domain	Domain	Interproscan
PF11977 all species →	RNase_Zc3h12a	Zc3h12a-like Ribonuclease NYN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051101 all species →	Family	ZC3H12/N4BP1 Ribonuclease and Regulator	Interproscan
IPR040546 all species →	Domain	Rege-1, UBA-like domain	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR021869 all species →	Domain	Ribonuclease Zc3h12a-like, NYN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12876 all species →	N4BP1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0036464 all species →	Cellular Component	cytoplasmic ribonucleoprotein granule	Interproscan
GO:0090502 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18668	ZC3H12, MCPIP; ribonuclease ZC3H12	EC:3.1.-.-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g10195.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

47TPM > 0

3Conditions

65.0Max TPM

15.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	20	14.92	57.04
whole organisms · low pH treatment	15	15	13.27	43.21
whole organisms · extra low pH treatment pH treatment	12	12	18.31	65.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	57.04
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	54.42
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	51.92
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	27.56
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	17.31
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	14.99
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	13.48
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	9.41
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	9.18
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	8.48
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	8.32
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	7.17
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	6.47
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.57
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	5.14
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	4.72
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	3.90
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.89
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.82
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.52
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.00
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	43.21
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	42.61
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	35.18
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	12.49
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	9.52
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	9.16
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	8.48
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	8.31
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	7.28
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	7.04
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	4.18
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	3.61
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.97
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.83
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.18
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	65.00
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	60.08
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	42.69
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	9.89
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	8.49
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	7.85
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	7.84
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	5.41
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	4.30
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.20
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	3.29
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	0.70

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.