Detailed information of g102.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBI2256786.1, MFS transporter [Pseudomonadota bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O75445Usherin OS=Homo sapiens OX=9606 GN=USH2A PE=1 SV=3
Q2QI47Usherin OS=Mus musculus OX=10090 GN=Ush2A PE=1 SV=2
Q8K3K1Usherin OS=Rattus norvegicus OX=10116 GN=Ush2a PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF13843DDE_Tnp_1_7Transposase IS4DomainInterproscan
PF02210Laminin_G_2Laminin G domainDomainInterproscan
PF13385Laminin_G_3Concanavalin A-like lectin/glucanases superfamilyDomainInterproscan
PF00041fn3Fibronectin type III domainDomainInterproscan
PF00053Laminin_EGFLaminin EGF domainDomainInterproscan
PF00055Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan
PF03009GDPDGlycerophosphoryl diester phosphodiesterase familyFamilyInterproscan
PF21787TNP-like_RNaseH_NTNP-like, RNase H N-terminal domainDomainInterproscan
PF21788TNP-like_GBDTNP-like, GTP-binding insertion domainDomainInterproscan
PF00665rveIntegrase core domainDomainInterproscan
PF04699P16-ArcARP2/3 complex 16 kDa subunit (p16-Arc)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000477DomainReverse transcriptase domainInterproscan
IPR029526DomainPiggyBac transposable element-derived proteinInterproscan
IPR001791DomainLaminin G domainInterproscan
IPR050372FamilyNeurexin-related cell adhesion and synaptic proteinInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR002049DomainLaminin-type EGF domainInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR008211DomainLaminin, N-terminalInterproscan
IPR050713FamilyReceptor-type Tyrosine-protein Phosphatases/UshersInterproscan
IPR006558DomainLamG-like jellyroll foldInterproscan
IPR000727DomainTarget SNARE coiled-coil homology domainInterproscan
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR020846DomainMajor facilitator superfamily domainInterproscan
IPR047200FamilyMSF-type transporter YcaD-likeInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR030395DomainGlycerophosphodiester phosphodiesterase domainInterproscan
IPR017946Homologous_superfamilyPLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamilyInterproscan
IPR051578FamilyGlycerophosphodiester PhosphodiesteraseInterproscan
IPR048365DomainTransposable element P transposase-like, RNase H domain, N-terminalInterproscan
IPR048366DomainTransposable element P transposase-like, GTP-binding insertion domainInterproscan
IPR001584DomainIntegrase, catalytic coreInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR006789FamilyActin-related protein 2/3 complex subunit 5Interproscan
IPR036743Homologous_superfamilyActin-related protein 2/3 complex subunit 5 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47272DDE_TNP_1_7 DOMAIN-CONTAINING PROTEINInterproscan
PTHR15036PIKACHURIN-LIKE PROTEINInterproscan
PTHR46957CYTOKINE RECEPTORInterproscan
PTHR19305SYNAPTOSOMAL ASSOCIATED PROTEINInterproscan
PTHR23521TRANSPORTER MFS SUPERFAMILYInterproscan
PTHR22958GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASEInterproscan
PTHR47577THAP DOMAIN-CONTAINING PROTEIN 6Interproscan
PTHR12644ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARCInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005484Molecular FunctionSNAP receptor activityInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006887Biological ProcessexocytosisInterproscan
GO:0006906Biological Processvesicle fusionInterproscan
GO:0016082Biological Processsynaptic vesicle primingInterproscan
GO:0019905Molecular Functionsyntaxin bindingInterproscan
GO:0031201Cellular ComponentSNARE complexInterproscan
GO:0031629Biological Processsynaptic vesicle fusion to presynaptic active zone membraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0006629Biological Processlipid metabolic processInterproscan
GO:0008081Molecular Functionphosphoric diester hydrolase activityInterproscan
GO:0046475Biological Processglycerophospholipid catabolic processInterproscan
GO:0047389Molecular Functionglycerophosphocholine phosphodiesterase activityInterproscan
GO:0015074Biological ProcessDNA integrationInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005885Cellular ComponentArp2/3 protein complexInterproscan
GO:0015629Cellular Componentactin cytoskeletonInterproscan
GO:0016477Biological Processcell migrationInterproscan
GO:0034314Biological ProcessArp2/3 complex-mediated actin nucleationInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0030833Biological Processregulation of actin filament polymerizationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K05754ARPC5; actin related protein 2/3 complex, subunit 5-Cilium and associated proteinsko03037deepkoala
Cytoskeleton proteinsko04812deepkoala

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