Gene detail

Detailed information of g1020.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3035822.1, unnamed protein product [Porites lobata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9S1G2	DNA polymerase I OS=Rhizobium leguminosarum OX=384 GN=polA PE=3 SV=1
P43741	DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=polA PE=3 SV=1
P00582	DNA polymerase I OS=Escherichia coli (strain K12) OX=83333 GN=polA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000024 (this species only)
Orthogroup (gene family)	OG0001692 (this species only)
Orthogroup (gene family)	OG0001757 (this species only)
Orthogroup (gene family)	OG0002583 (this species only)
Orthogroup (gene family)	OG0005259 (this species only)
Orthogroup (gene family)	OG0006409 (this species only)
Orthogroup (gene family)	OG0007709 (this species only)
Orthogroup (gene family)	OG0008336 (this species only)
Orthogroup (gene family)	OG0008895 (this species only)
Orthogroup (gene family)	OG0170893 (this species only)
Orthogroup (gene family)	OG0171219 (this species only)
Orthogroup (gene family)	OG0171986 (this species only)
Orthogroup (gene family)	OG0173514 (this species only)
Orthogroup (gene family)	OG0173916 (this species only)
Orthogroup (gene family)	OG0174073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan
PF10217 all species →	DUF2039	Uncharacterized conserved protein (DUF2039)	Family	Interproscan
PF02739 all species →	5_3_exonuc_N	5'-3' exonuclease, N-terminal resolvase-like domain	Domain	Interproscan
PF01367 all species →	5_3_exonuc	5'-3' exonuclease, C-terminal SAM fold	Domain	Interproscan
PF00476 all species →	DNA_pol_A	DNA polymerase family A	Family	Interproscan
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan
PF02460 all species →	Patched	Patched family	Family	Interproscan
PF09073 all species →	BUD22	BUD22	Family	Interproscan
PF15294 all species →	Leu_zip	Leucine zipper	Family	Interproscan
PF00329 all species →	Complex1_30kDa	Respiratory-chain NADH dehydrogenase, 30 Kd subunit	Family	Interproscan
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR019351 all species →	Family	Protein of unknown function DUF2039	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR018320 all species →	Family	DNA polymerase 1	Interproscan
IPR029060 all species →	Homologous_superfamily	PIN-like domain superfamily	Interproscan
IPR020045 all species →	Domain	DNA polymerase I-like, H3TH domain	Interproscan
IPR002298 all species →	Family	DNA polymerase A	Interproscan
IPR008918 all species →	Conserved_site	Helix-hairpin-helix motif, class 2	Interproscan
IPR002421 all species →	Domain	5'-3' exonuclease	Interproscan
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan
IPR036279 all species →	Homologous_superfamily	5'-3' exonuclease, C-terminal domain superfamily	Interproscan
IPR019760 all species →	Conserved_site	DNA-directed DNA polymerase, family A, conserved site	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR020046 all species →	Domain	5'-3' exonuclease, alpha-helical arch, N-terminal	Interproscan
IPR001098 all species →	Domain	DNA-directed DNA polymerase, family A, palm domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001036 all species →	Family	Acriflavin resistance protein	Interproscan
IPR051697 all species →	Family	Patched domain-containing protein	Interproscan
IPR000731 all species →	Domain	Sterol-sensing domain	Interproscan
IPR003392 all species →	Family	Protein patched/dispatched	Interproscan
IPR015158 all species →	Domain	Bud22 domain	Interproscan
IPR026157 all species →	Family	Leucine zipper transcription factor-like protein 1	Interproscan
IPR020396 all species →	Conserved_site	NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site	Interproscan
IPR037232 all species →	Homologous_superfamily	NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily	Interproscan
IPR001268 all species →	Domain	NADH:ubiquinone oxidoreductase, 30kDa subunit	Interproscan
IPR010218 all species →	Family	NADH dehydrogenase, subunit C	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23507 all species →	ZGC:174356	Interproscan
PTHR22876 all species →	ZGC:101016	Interproscan
PTHR10133 all species →	DNA POLYMERASE I	Interproscan
PTHR10796 all species →	PATCHED-RELATED	Interproscan
PTHR21635 all species →	LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE	Interproscan
PTHR10884 all species →	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003887 all species →	Molecular Function	DNA-directed DNA polymerase activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0008409 all species →	Molecular Function	5'-3' exonuclease activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:1903565 all species →	Biological Process	negative regulation of protein localization to cilium	Interproscan
GO:0016651 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan
GO:0008137 all species →	Molecular Function	NADH dehydrogenase (ubiquinone) activity	Interproscan
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02335	polA; DNA polymerase I	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala
K03936	NDUFS3; NADH dehydrogenase (ubiquinone) Fe-S protein 3	EC:7.1.1.2	Non-alcoholic fatty liver disease	ko04932	deepkoala
K20840	SLC46A3; MFS transporter, PCFT/HCP family, solute carrier family 46, member 3	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.