Gene detail

Detailed information of g1024.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3039174.1, unnamed protein product [Porites lobata]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2Q0	Phospholipid-transporting ATPase IA OS=Homo sapiens OX=9606 GN=ATP8A1 PE=1 SV=1
Q29449	Probable phospholipid-transporting ATPase IA OS=Bos taurus OX=9913 GN=ATP8A1 PE=1 SV=2
P70704	Phospholipid-transporting ATPase IA OS=Mus musculus OX=10090 GN=Atp8a1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000531 (this species only)
Orthogroup (gene family)	OG0001359 (this species only)
Orthogroup (gene family)	OG0001508 (this species only)
Orthogroup (gene family)	OG0001869 (this species only)
Orthogroup (gene family)	OG0003095 (this species only)
Orthogroup (gene family)	OG0003937 (this species only)
Orthogroup (gene family)	OG0003969 (this species only)
Orthogroup (gene family)	OG0008559 (this species only)
Orthogroup (gene family)	OG0012599 (this species only)
Orthogroup (gene family)	OG0032233 (this species only)
Orthogroup (gene family)	OG0080414 (this species only)
Orthogroup (gene family)	OG0171059 (this species only)
Orthogroup (gene family)	OG0172379 (this species only)
Orthogroup (gene family)	OG0173976 (this species only)
Orthogroup (gene family)	OG0174532 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16209 all species →	PhoLip_ATPase_N	Phospholipid-translocating ATPase N-terminal	Family	Interproscan
PF13246 all species →	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan
PF16212 all species →	PhoLip_ATPase_C	Phospholipid-translocating P-type ATPase C-terminal	Family	Interproscan
PF12836 all species →	HHH_3	Helix-hairpin-helix motif	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00764 all species →	Arginosuc_synth	Arginosuccinate synthase N-terminal HUP domain	Domain	Interproscan
PF20979 all species →	Arginosuc_syn_C	Arginosuccinate synthase C-terminal domain	Domain	Interproscan
PF02207 all species →	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan
PF13229 all species →	Beta_helix	Right handed beta helix region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008250 all species →	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR023299 all species →	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR032631 all species →	Domain	P-type ATPase, N-terminal	Interproscan
IPR023298 all species →	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR044492 all species →	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan
IPR006539 all species →	Family	P-type ATPase, subfamily IV	Interproscan
IPR001757 all species →	Family	P-type ATPase	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR018303 all species →	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR032630 all species →	Domain	P-type ATPase, C-terminal	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR003583 all species →	Domain	Helix-hairpin-helix DNA-binding motif, class 1	Interproscan
IPR048267 all species →	Domain	Arginosuccinate synthase-like, N-terminal domain	Interproscan
IPR001518 all species →	Family	Argininosuccinate synthase	Interproscan
IPR023434 all species →	Family	Argininosuccinate synthase, type 1 subfamily	Interproscan
IPR024074 all species →	Homologous_superfamily	Argininosuccinate synthetase, catalytic/multimerisation domain body	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR018223 all species →	Conserved_site	Argininosuccinate synthase, conserved site	Interproscan
IPR048268 all species →	Domain	Arginosuccinate synthase C-terminal domain	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR047504 all species →	Domain	F-box only protein 11, UBR-box	Interproscan
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan
IPR012334 all species →	Homologous_superfamily	Pectin lyase fold	Interproscan
IPR039448 all species →	Domain	Right handed beta helix domain	Interproscan
IPR051550 all species →	Family	SCF Complex Subunits and Alginate Epimerases	Interproscan
IPR006626 all species →	Repeat	Parallel beta-helix repeat	Interproscan
IPR006633 all species →	Domain	Carbohydrate-binding/sugar hydrolysis domain	Interproscan
IPR011050 all species →	Homologous_superfamily	Pectin lyase fold/virulence factor	Interproscan
IPR022441 all species →	Repeat	Parallel beta-helix repeat-2	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24092 all species →	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	Interproscan
PTHR19849 all species →	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan
PTHR11587 all species →	ARGININOSUCCINATE SYNTHASE	Interproscan
PTHR47501 all species →	TRANSPOSASE-RELATED	Interproscan
PTHR22990 all species →	F-BOX ONLY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0045332 all species →	Biological Process	phospholipid translocation	Interproscan
GO:0140326 all species →	Molecular Function	ATPase-coupled intramembrane lipid transporter activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005215 all species →	Molecular Function	transporter activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0004055 all species →	Molecular Function	argininosuccinate synthase activity	Interproscan
GO:0006526 all species →	Biological Process	L-arginine biosynthetic process	Interproscan
GO:0000050 all species →	Biological Process	urea cycle	Interproscan
GO:0000053 all species →	Biological Process	argininosuccinate metabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01940	argG, ASS1; argininosuccinate synthase	EC:6.3.4.5	Exosome	ko04147	deepkoala
K10260	FBXW7, SEL10; F-box and WD-40 domain protein 7	-	Ubiquitin system	ko04121	deepkoala
K10297	FBXO11; F-box protein 11	-	Ubiquitin system	ko04121	deepkoala
K14802	DRS2, ATP8A; phospholipid-transporting ATPase	EC:7.6.2.1	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.