Gene detail

Detailed information of g1026.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH6779726.1, Comp [Phodopus roborovskii]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R0G6	Cartilage oligomeric matrix protein OS=Mus musculus OX=10090 GN=Comp PE=1 SV=2
P49747	Cartilage oligomeric matrix protein OS=Homo sapiens OX=9606 GN=COMP PE=1 SV=2
P35445	Cartilage oligomeric matrix protein OS=Bos taurus OX=9913 GN=COMP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000016 (this species only)
Orthogroup (gene family)	OG0000017 (this species only)
Orthogroup (gene family)	OG0000075 (this species only)
Orthogroup (gene family)	OG0000173 (this species only)
Orthogroup (gene family)	OG0000206 (this species only)
Orthogroup (gene family)	OG0000351 (this species only)
Orthogroup (gene family)	OG0003203 (this species only)
Orthogroup (gene family)	OG0004582 (this species only)
Orthogroup (gene family)	OG0006979 (this species only)
Orthogroup (gene family)	OG0012708 (this species only)
Orthogroup (gene family)	OG0059484 (this species only)
Orthogroup (gene family)	OG0080353 (this species only)
Orthogroup (gene family)	OG0172473 (this species only)
Orthogroup (gene family)	OG0172589 (this species only)
Orthogroup (gene family)	OG0173665 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species
Transcription factor family	ETS · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02412 all species →	TSP_3	Thrombospondin type 3 repeat	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF05735 all species →	TSP_C	Thrombospondin C-terminal region	Family	Interproscan
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan
PF13906 all species →	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan
PF00178 all species →	Ets	Ets-domain	Domain	Interproscan
PF05458 all species →	Siva	Cd27 binding protein (Siva)	Family	Interproscan
PF21383 all species →	DPAGT1_ins	DPAGT1 insertion domain	Domain	Interproscan
PF00953 all species →	Glycos_transf_4	Glycosyl transferase family 4	Family	Interproscan
PF11717 all species →	Tudor-knot	RNA binding activity-knot of a chromodomain	Family	Interproscan
PF17039 all species →	Glyco_tran_10_N	Fucosyltransferase, N-terminal	Domain	Interproscan
PF00852 all species →	Glyco_transf_10	Glycosyltransferase family 10 (fucosyltransferase) C-term	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR017897 all species →	Repeat	Thrombospondin, type 3 repeat	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR028974 all species →	Homologous_superfamily	TSP type-3 repeat	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR008859 all species →	Domain	Thrombospondin, C-terminal	Interproscan
IPR003367 all species →	Repeat	Thrombospondin, type 3-like repeat	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan
IPR029485 all species →	Domain	Cationic amino acid transporter, C-terminal	Interproscan
IPR000418 all species →	Domain	Ets domain	Interproscan
IPR046328 all species →	Family	ETS family	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR022773 all species →	Family	Siva	Interproscan
IPR048439 all species →	Domain	DPAGT1, insertion domain	Interproscan
IPR000715 all species →	Family	Glycosyl transferase, family 4	Interproscan
IPR033895 all species →	Family	UDP-GlcNAc-dolichyl-phosphate GlcNAc phosphotransferase	Interproscan
IPR023211 all species →	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR025995 all species →	Domain	RNA binding activity-knot of a chromodomain	Interproscan
IPR001584 all species →	Domain	Integrase, catalytic core	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR001503 all species →	Family	Glycosyl transferase family 10	Interproscan
IPR038577 all species →	Homologous_superfamily	GT10-like, C-terminal domain superfamily	Interproscan
IPR031481 all species →	Domain	Fucosyltransferase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10199 all species →	THROMBOSPONDIN	Interproscan
PTHR43243 all species →	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR11849 all species →	ETS	Interproscan
PTHR14365 all species →	APOPTOSIS REGULATORY PROTEIN SIVA	Interproscan
PTHR10571 all species →	UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE	Interproscan
PTHR31511 all species →	PROTEIN CBG23764	Interproscan
PTHR46585 all species →	INTEGRASE CORE DOMAIN CONTAINING PROTEIN	Interproscan
PTHR11929 all species →	ALPHA- 1,3 -FUCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0005175 all species →	Molecular Function	CD27 receptor binding	Interproscan
GO:0097191 all species →	Biological Process	extrinsic apoptotic signaling pathway	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0003975 all species →	Molecular Function	UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0006488 all species →	Biological Process	dolichol-linked oligosaccharide biosynthetic process	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0015074 all species →	Biological Process	DNA integration	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008417 all species →	Molecular Function	fucosyltransferase activity	Interproscan
GO:0036065 all species →	Biological Process	fucosylation	Interproscan
GO:0046920 all species →	Molecular Function	alpha-(1->3)-fucosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14464	FUT-1, FucTC; alpha-1,3-fucosyltransferase	EC:2.4.1.-	Various types of N-glycan biosynthesis	ko00513	deepkoala
K22744	SIVA1; apoptosis regulatory protein Siva	-	p53 signaling pathway	ko04115	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.