Gene detail

Detailed information of g1031.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047132290.1, talin-2 isoform X3 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4G6	Talin-2 OS=Homo sapiens OX=9606 GN=TLN2 PE=1 SV=4
P54939	Talin-1 OS=Gallus gallus OX=9031 GN=TLN1 PE=1 SV=2
Q9Y490	Talin-1 OS=Homo sapiens OX=9606 GN=TLN1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001075 (this species only)
Orthogroup (gene family)	OG0002127 (this species only)
Orthogroup (gene family)	OG0003477 (this species only)
Orthogroup (gene family)	OG0003605 (this species only)
Orthogroup (gene family)	OG0004203 (this species only)
Orthogroup (gene family)	OG0005221 (this species only)
Orthogroup (gene family)	OG0006033 (this species only)
Orthogroup (gene family)	OG0006062 (this species only)
Orthogroup (gene family)	OG0029691 (this species only)
Orthogroup (gene family)	OG0039920 (this species only)
Orthogroup (gene family)	OG0048254 (this species only)
Orthogroup (gene family)	OG0080579 (this species only)
Orthogroup (gene family)	OG0172659 (this species only)
Orthogroup (gene family)	OG0172963 (this species only)
Orthogroup (gene family)	OG0173349 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03644 all species →	Glyco_hydro_85	Glycosyl hydrolase family 85	Family	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF05907 all species →	CXXC_Zn-b_euk	CXXC motif containing zinc binding protein, eukaryotic	Family	Interproscan
PF04193 all species →	PQ-loop	PQ loop repeat	Repeat	Interproscan
PF01565 all species →	FAD_binding_4	FAD binding domain	Domain	Interproscan
PF02913 all species →	FAD-oxidase_C	FAD linked oxidases, C-terminal domain	Domain	Interproscan
PF00415 all species →	RCC1	Regulator of chromosome condensation (RCC1) repeat	Repeat	Interproscan
PF09141 all species →	Talin_middle	Talin, middle domain	Domain	Interproscan
PF02174 all species →	IRS	PTB domain (IRS-1 type)	Domain	Interproscan
PF08913 all species →	VBS	Vinculin Binding Site	Domain	Interproscan
PF21692 all species →	Talin_R4	Talin, R4 domain	Domain	Interproscan
PF00373 all species →	FERM_M	FERM central domain	Domain	Interproscan
PF01608 all species →	I_LWEQ	I/LWEQ domain	Family	Interproscan
PF00160 all species →	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032979 all species →	Family	Cytosolic endo-beta-N-acetylglucosaminidase	Interproscan
IPR005201 all species →	Domain	Glycoside hydrolase, family 85	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR008584 all species →	Family	CXXC motif containing zinc binding protein, eukaryotic	Interproscan
IPR016817 all species →	Family	Mannose-P-dolichol utilization defect 1 protein	Interproscan
IPR006603 all species →	Repeat	PQ-loop repeat	Interproscan
IPR016167 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 1	Interproscan
IPR006094 all species →	Domain	FAD linked oxidase, N-terminal	Interproscan
IPR016169 all species →	Homologous_superfamily	FAD-binding, type PCMH, subdomain 2	Interproscan
IPR036318 all species →	Homologous_superfamily	FAD-binding, type PCMH-like superfamily	Interproscan
IPR016166 all species →	Domain	FAD-binding domain, PCMH-type	Interproscan
IPR004113 all species →	Domain	FAD-binding oxidoreductase/transferase, type 4, C-terminal	Interproscan
IPR016164 all species →	Homologous_superfamily	FAD-linked oxidase-like, C-terminal	Interproscan
IPR016171 all species →	Homologous_superfamily	Vanillyl-alcohol oxidase, C-terminal subdomain 2	Interproscan
IPR051264 all species →	Family	FAD-binding Oxidoreductase/Transferase Type 4	Interproscan
IPR051997 all species →	Family	Serine/threonine-protein kinase NEK	Interproscan
IPR000408 all species →	Repeat	Regulator of chromosome condensation, RCC1	Interproscan
IPR009091 all species →	Homologous_superfamily	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Interproscan
IPR019747 all species →	Conserved_site	FERM conserved site	Interproscan
IPR035963 all species →	Homologous_superfamily	FERM superfamily, second domain	Interproscan
IPR035964 all species →	Homologous_superfamily	I/LWEQ domain superfamily	Interproscan
IPR000299 all species →	Domain	FERM domain	Interproscan
IPR002558 all species →	Domain	I/LWEQ domain	Interproscan
IPR015224 all species →	Domain	Talin, central	Interproscan
IPR002404 all species →	Domain	IRS-type PTB domain	Interproscan
IPR036476 all species →	Homologous_superfamily	Talin, central domain superfamily	Interproscan
IPR036723 all species →	Homologous_superfamily	Alpha-catenin/vinculin-like superfamily	Interproscan
IPR015009 all species →	Domain	Vinculin-binding site-containing domain	Interproscan
IPR049108 all species →	Domain	Talin, R4 domain	Interproscan
IPR019749 all species →	Domain	Band 4.1 domain	Interproscan
IPR019748 all species →	Domain	FERM central domain	Interproscan
IPR037438 all species →	Domain	Talin-1/2, rod-segment	Interproscan
IPR014352 all species →	Homologous_superfamily	FERM/acyl-CoA-binding protein superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR020892 all species →	Conserved_site	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Interproscan
IPR029000 all species →	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR044666 all species →	Family	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like	Interproscan
IPR002130 all species →	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13246 all species →	ENDO BETA N-ACETYLGLUCOSAMINIDASE	Interproscan
PTHR19849 all species →	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan
PTHR12857 all species →	UNCHARACTERIZED	Interproscan
PTHR12226 all species →	MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED	Interproscan
PTHR43716 all species →	D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL	Interproscan
PTHR44535 all species →	PROTEIN CBG16200	Interproscan
PTHR19981 all species →	TALIN	Interproscan
PTHR45625 all species →	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan
GO:0033925 all species →	Molecular Function	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0001726 all species →	Cellular Component	ruffle	Interproscan
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0003755 all species →	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0000413 all species →	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01227	ENGASE; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	EC:3.2.1.96	Other glycan degradation	ko00511	deepkoala
K06271	TLN; talin	-	Exosome	ko04147	deepkoala
K09336	VSX2, CHX10; visual system homeobox protein 2	-	Transcription factors	ko03000	deepkoala
K09660	MPDU1; mannose-P-dolichol utilization defect 1	-	Glycosyltransferases	ko01003	deepkoala
K12734	PPIL3; peptidyl-prolyl cis-trans isomerase-like 3	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala
K24756	WDR86; WD repeat-containing protein 86	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.