Detailed information of g1033.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_002160201.3, rhomboid-related protein 4 isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8BHC7Rhomboid-related protein 4 OS=Mus musculus OX=10090 GN=Rhbdd1 PE=1 SV=1
Q4V8F3Rhomboid-related protein 4 OS=Rattus norvegicus OX=10116 GN=Rhbdd1 PE=2 SV=1
Q8TEB9Rhomboid-related protein 4 OS=Homo sapiens OX=9606 GN=RHBDD1 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01694RhomboidRhomboid familyFamilyInterproscan
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF03178CPSF_ACPSF A subunit regionRepeatInterproscan
PF04627ATP-synt_EpsMitochondrial ATP synthase epsilon chainFamilyInterproscan
PF02874ATP-synt_ab_NATP synthase alpha/beta family, beta-barrel domainDomainInterproscan
PF00231ATP-syntATP synthaseDomainInterproscan
PF00006ATP-synt_abATP synthase alpha/beta family, nucleotide-binding domainDomainInterproscan
PF00306ATP-synt_ab_CATP synthase alpha/beta chain, C terminal domainDomainInterproscan
PF00307CHCalponin homology (CH) domainDomainInterproscan
PF01746tRNA_m1G_MTtRNA (Guanine-1)-methyltransferaseFamilyInterproscan
PF00330AconitaseAconitase family (aconitate hydratase)FamilyInterproscan
PF01245Ribosomal_L19Ribosomal protein L19FamilyInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00071RasRas familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035952Homologous_superfamilyRhomboid-like superfamilyInterproscan
IPR022764DomainPeptidase S54, rhomboid domainInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR051570FamilyTBC1 domain family involved in cilium biogenesisInterproscan
IPR004871DomainCleavage/polyadenylation specificity factor, A subunit, C-terminalInterproscan
IPR050358FamilyRSE1/DDB1/CFT1/CPSF1Interproscan
IPR036742Homologous_superfamilyATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialInterproscan
IPR006721FamilyATP synthase, F1 complex, epsilon subunit, mitochondrialInterproscan
IPR000131FamilyATP synthase, F1 complex, gamma subunitInterproscan
IPR005294FamilyATP synthase, F1 complex, alpha subunitInterproscan
IPR004100DomainATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainInterproscan
IPR023632Conserved_siteATP synthase, F1 complex, gamma subunit conserved siteInterproscan
IPR020003Active_siteATPase, alpha/beta subunit, nucleotide-binding domain, active siteInterproscan
IPR035968Homologous_superfamilyATP synthase, F1 complex, gamma subunit superfamilyInterproscan
IPR000793DomainATP synthase, alpha subunit, C-terminalInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR023366Homologous_superfamilyATP synthase subunit alpha, N-terminal domain-like superfamilyInterproscan
IPR036121Homologous_superfamilyATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyInterproscan
IPR033732DomainATP synthase, F1 complex, alpha subunit nucleotide-binding domainInterproscan
IPR000194DomainATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainInterproscan
IPR038376Homologous_superfamilyATP synthase, alpha subunit, C-terminal domain superfamilyInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR039959FamilyFimbrin/PlastinInterproscan
IPR001589Conserved_siteActinin-type actin-binding domain, conserved siteInterproscan
IPR016009DomaintRNA methyltransferase TRMD/TRM10-type domainInterproscan
IPR050067FamilyIsopropylmalate dehydratase and related enzymesInterproscan
IPR023148Homologous_superfamilytRNA (guanine-N(1)-)-methyltransferase, C-terminal domain superfamilyInterproscan
IPR018257Conserved_siteLarge ribosomal subunit protein bL19, conserved siteInterproscan
IPR018136Binding_siteAconitase family, 4Fe-4S cluster binding siteInterproscan
IPR002649FamilytRNA (guanine-N1-)-methyltransferase TrmDInterproscan
IPR001030DomainAconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domainInterproscan
IPR001857FamilyLarge ribosomal subunit protein bL19Interproscan
IPR036008Homologous_superfamilyAconitase, iron-sulfur domainInterproscan
IPR029026Homologous_superfamilytRNA (guanine-N1-)-methyltransferase, N-terminalInterproscan
IPR015931Homologous_superfamilyAconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3Interproscan
IPR004430Family3-isopropylmalate dehydratase, large subunitInterproscan
IPR029028Homologous_superfamilyAlpha/beta knot methyltransferasesInterproscan
IPR033941Domain3-Isopropylmalate dehydratase, catalytic domainInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR051065FamilyRas-related small GTPaseInterproscan
IPR001806FamilySmall GTPaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43066RHOMBOID-RELATED PROTEINInterproscan
PTHR19853WD REPEAT CONTAINING PROTEIN 3 WDR3Interproscan
PTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYInterproscan
PTHR12448ATP SYNTHASE EPSILON CHAIN, MITOCHONDRIALInterproscan
PTHR48082ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALInterproscan
PTHR19961FIMBRIN/PLASTINInterproscan
PTHR43822HOMOACONITASE, MITOCHONDRIAL-RELATEDInterproscan
PTHR24023COLLAGEN ALPHAInterproscan
PTHR45704RAS-LIKE FAMILY MEMBER 11Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004252Molecular Functionserine-type endopeptidase activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0030490Biological Processmaturation of SSU-rRNAInterproscan
GO:0030515Molecular FunctionsnoRNA bindingInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0034388Cellular ComponentPwp2p-containing subcomplex of 90S preribosomeInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005847Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:0000275Cellular Componentobsolete mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)Interproscan
GO:0015986Biological Processproton motive force-driven ATP synthesisInterproscan
GO:0046933Molecular Functionproton-transporting ATP synthase activity, rotational mechanismInterproscan
GO:0005743Cellular Componentmitochondrial inner membraneInterproscan
GO:0042776Biological Processproton motive force-driven mitochondrial ATP synthesisInterproscan
GO:0045261Cellular Componentproton-transporting ATP synthase complex, catalytic core F(1)Interproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0043531Molecular FunctionADP bindingInterproscan
GO:0046034Biological ProcessATP metabolic processInterproscan
GO:1902600Biological Processproton transmembrane transportInterproscan
GO:0032559Molecular Functionadenyl ribonucleotide bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005884Cellular Componentactin filamentInterproscan
GO:0032432Cellular Componentactin filament bundleInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0051017Biological Processactin filament bundle assemblyInterproscan
GO:0051639Biological Processactin filament network formationInterproscan
GO:0008033Biological ProcesstRNA processingInterproscan
GO:0052906Molecular FunctiontRNA (guanine(37)-N1)-methyltransferase activityInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003861Molecular Function3-isopropylmalate dehydratase activityInterproscan
GO:0009098Biological ProcessL-leucine biosynthetic processInterproscan
GO:0051539Molecular Function4 iron, 4 sulfur cluster bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01703leuC, IPMI-L; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunitEC:4.2.1.33
EC:4.2.1.35
Peptidases and inhibitorsko01002deepkoala
Photosynthesis proteinsko00194deepkoala
Ion channelsko04040deepkoala
Glucosinolate biosynthesisko00966deepkoala

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