Gene detail

Detailed information of g10331.t1 in Montipora capitata

Genomic Location: Sc0000288:94372...108794
NR annotation: XP_029211909.2, deubiquitinating protein VCPIP1-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10331.t1

atgtggcgagggttgagagtttacagtggaatctgcccggattccgagtgtcacgctaagctttattttccatcttacgcttcctccagcgttgaatgcacaggttgtggccaacaccatgcgaaagacagccttctcaacgtggaaaacattgaagaccctgaagtggcactgcgaagtcttctccattccgttttgctcggtcacacggcctccaaaaccacaccagacctagtgaaagtcaaaggctattcaaactatcattgcaagctattgtcaccacttttaactcgttatggtatggataaacggacaggcgaagggaagcttttaagggagatgggccagggggacgtctttgattgtgctgttttgggtgatcgtgcctttcagatcgaatcagaacacattgaaaccgctggctacggtagagataaaacagggtcactgttgtatcttaggaacacgcttgaagcaattaaagtagtcaacgacgatgaagaaaggcttgttcctttacatgtcgatggcgatgggcattgccttgttcatgcaatttcacgtggtcttgttggacgggaaatcttctggcatgctctcagggcaaatcttaagaaccacttggaaactgagttacagaagtacaaagggttgttcagagattttattcacgaggatgaatggatagatatcatttctgaggctgacccttactttgaacctcctgatggagaggggcttgggttgagaaacatccatgtctttggtcttgctaatgttcttcacagaccaatcatactacttgacaatgtctctggaatgcaatcaagtggagattactctggaatctttcttcctgcgttgatttgtgaagagaaatgcatgcgagaaagcattcttaataaacccttggctgtagcgtggagtagctctgggcgtaatcatttcattcctctggttggcataaaagggaagcctttgccaaagttgccatcctggttgattcctaaggcatggggcttaccaaatgagctggtgaggcgatatgttgaatttgattcacaggggcactgttttattggaggggaacgttgcctccaggaaaagtatgttcaaagactgattaaatccatggatgatcttttcatgaaaaagcacaacatctcagcacaacttgtgactgaagttcaccagtttgtttacaagccatctggaatggttggtgtcaaacctgaaacagttgccacagcaacaaaatcggccgtttcagatgggcggctttacaggtgtttgtcatgtaaagcgctgtgtgaacaccattctgacatctcatctgaaatgctaaaagcaggggggaaattctacgatatagctgtgcagactcatggaccactccaagaaggattaaattactcatttccaacggaagaacttgtgtgcttatttgatgctgagagagacacattggttgctgtgaaacacaagaatgtgaccatacttgattgtcacctttgccatggtcctcttcgttgcgtcaaatcagacggcagtgcagtgtacatgaatggggataggacgtcaacccctgtgaaaggcactagtcaatgtggttgtggatacaaacactattggaatggaaaggagtataataacatgcctgaaagttttccaatcaccttggaatggggtggtgaaacagtgacagagacggtgtattggttccaatatgaagacgacccagctctcaattccaacgtatacgatgttgcagccaaacttgtacagcgccattttccaggggagtttggcagtgaaaggctggtgcagaaagtagtagacatcattttgaggcagacagcaaggagagaaggagaaaacaaaggtgtgtcagaactgcaacatgcacatggcacaaatgtagaaagttctgatcaagaagcaaatgtcagtacttttacaccaagcaagataattctgacgggagaaaaaaagaaaactcttcacaaggaggaactaaccatgagtgagaaagaaaaagtgttaaaggccaagactgagcatcatgctgcggtaatgcagaagaggcggagtggtgaaggtgcaaagaaaatgttcaacaaagaagctaaagtggcaaaacaacagactgtcatcaagtcacaacaacaagatcctcaagcaaacctaagtaaaggtgaagataaccaagtgtcagcacaaccagttgtgaaacgaacagagaagaaagtgcggctttcaacatcagatggaaaacagtgcatgttaacactatctgtagatacgacatttaaacagcttcaagagctgatcgaaaaggagcttgggataccagcagcacagatacgaatcaggtatgggtttccaccccgtgagttgcatcctccaaatgagggacttgaagaggatccacttcccctgcagcatggtgaccgaatcatggtggagcatttaaagccatctgttcctgaagagcaaacacctgatgtcgtcatgtcagaactgaaggcacaggaaggtggagttagtgattctcacgagtcgtcagttcaagatgaagcagaaaagcaaagacaagccatggcatctgtcctttttaatgctctcagtgctattggaggtagtgatatgtgggaagcagcgcagaactgctatgaaatgtttgaaagagggggagtttattacagccaagtcgtaaatgatctcggtcctctccagccaaatcagcatttcacattaccattctttcccaacaaggtatttgcttacaatgcagataaggatcgtctggatttgtgtcttggccagaggcacattcaagttcagccactagacgatgaaacattacgactggctcacacccgccccacgcaaacctcgacgagtgaaagagccagcagtctgtcgacagaggccagcttcagtggtgctattggacacagggataccactcgcgctcgtgttgcattttctggagaaggtagaactctgtcaagtgcttcatcttctcaaagtgagagcgcaaaggctgaagtacagttgtccagagtcagatctcctcagacggctatggatacctcagcgagtgattttgagaatgaagtgtttgcaaaaagtaacaaggaaattccagatgaggaagttgaggaggtcaacaaggaaagacaacttgtttcgggattaattgtctccgaggaagtgggctttacaagaactgagcacgcagcggaaatgttagatgagagtccagcgacattcaccccgagtactttgcaaggaggtgaaatacaatcggcagacgaacagacttcagtaagtgaagagggaaaaataaatgaaacaggaatgtcaggggagatggctgtggataatgagaacacggatcatgtggggaatgatcatgaagatgaacaaggaatggttgttgagggccgtttggctgaaatgcgggacaccttaagagaggtttcagtggagcagtttggtgaaagtgtggtaaatggacttgaaaatgttgctggaatagaaactgagaacatggaagcaagcgttgatcaaagttacagggacagcaatgagcgggttgtgaatcctattgatacgtcaaaaatgcatgaagaccaagtggatgaaccctctttgagatctacacgtgtcgactcagacgtaatggaaaccgaacagagaacagttcaggaagacggtgtgactgacgatgtcacacaacccatgcctgatgatcaactggtgactggggatgtcattcaagatggagtcagcggtggtgtcatagatttgaaccctggagaggctacggtagatcgtactgatgatggagtagcgattcatggatcgattgccatggagattgacactcagagtgagactatcgaatcggggttagttccgaattctgtttgtgtagcaggtgacgttcagcccggaagcgatttattaccggaagcggaaatgaaaactgacaacaacgaactaagcaactgtggagacacatcacttctgcacagtaaggttacgttgtcaagaacggaaacaggcaatggtaccgtgtcatctcaagcttcagtagcagtaggcgacaatctaatgaaagagaatgaaactggaacaattgctgatagttga

Transcript

g10331.t1

ATGTGGCGAGGGTTGAGAGTTTACAGTGGAATCTGCCCGGATTCCGAGTGTCACGCTAAGCTTTATTTTCCATCTTACGCTTCCTCCAGCGTTGAATGCACAGGTTGTGGCCAACACCATGCGAAAGACAGCCTTCTCAACGTGGAAAACATTGAAGACCCTGAAGTGGCACTGCGAAGTCTTCTCCATTCCGTTTTGCTCGGTCACACGGCCTCCAAAACCACACCAGACCTAGTGAAAGTCAAAGGCTATTCAAACTATCATTGCAAGCTATTGTCACCACTTTTAACTCGTTATGGTATGGATAAACGGACAGGCGAAGGGAAGCTTTTAAGGGAGATGGGCCAGGGGGACGTCTTTGATTGTGCTGTTTTGGGTGATCGTGCCTTTCAGATCGAATCAGAACACATTGAAACCGCTGGCTACGGTAGAGATAAAACAGGGTCACTGTTGTATCTTAGGAACACGCTTGAAGCAATTAAAGTAGTCAACGACGATGAAGAAAGGCTTGTTCCTTTACATGTCGATGGCGATGGGCATTGCCTTGTTCATGCAATTTCACGTGGTCTTGTTGGACGGGAAATCTTCTGGCATGCTCTCAGGGCAAATCTTAAGAACCACTTGGAAACTGAGTTACAGAAGTACAAAGGGTTGTTCAGAGATTTTATTCACGAGGATGAATGGATAGATATCATTTCTGAGGCTGACCCTTACTTTGAACCTCCTGATGGAGAGGGGCTTGGGTTGAGAAACATCCATGTCTTTGGTCTTGCTAATGTTCTTCACAGACCAATCATACTACTTGACAATGTCTCTGGAATGCAATCAAGTGGAGATTACTCTGGAATCTTTCTTCCTGCGTTGATTTGTGAAGAGAAATGCATGCGAGAAAGCATTCTTAATAAACCCTTGGCTGTAGCGTGGAGTAGCTCTGGGCGTAATCATTTCATTCCTCTGGTTGGCATAAAAGGGAAGCCTTTGCCAAAGTTGCCATCCTGGTTGATTCCTAAGGCATGGGGCTTACCAAATGAGCTGGTGAGGCGATATGTTGAATTTGATTCACAGGGGCACTGTTTTATTGGAGGGGAACGTTGCCTCCAGGAAAAGTATGTTCAAAGACTGATTAAATCCATGGATGATCTTTTCATGAAAAAGCACAACATCTCAGCACAACTTGTGACTGAAGTTCACCAGTTTGTTTACAAGCCATCTGGAATGGTTGGTGTCAAACCTGAAACAGTTGCCACAGCAACAAAATCGGCCGTTTCAGATGGGCGGCTTTACAGGTGTTTGTCATGTAAAGCGCTGTGTGAACACCATTCTGACATCTCATCTGAAATGCTAAAAGCAGGGGGGAAATTCTACGATATAGCTGTGCAGACTCATGGACCACTCCAAGAAGGATTAAATTACTCATTTCCAACGGAAGAACTTGTGTGCTTATTTGATGCTGAGAGAGACACATTGGTTGCTGTGAAACACAAGAATGTGACCATACTTGATTGTCACCTTTGCCATGGTCCTCTTCGTTGCGTCAAATCAGACGGCAGTGCAGTGTACATGAATGGGGATAGGACGTCAACCCCTGTGAAAGGCACTAGTCAATGTGGTTGTGGATACAAACACTATTGGAATGGAAAGGAGTATAATAACATGCCTGAAAGTTTTCCAATCACCTTGGAATGGGGTGGTGAAACAGTGACAGAGACGGTGTATTGGTTCCAATATGAAGACGACCCAGCTCTCAATTCCAACGTATACGATGTTGCAGCCAAACTTGTACAGCGCCATTTTCCAGGGGAGTTTGGCAGTGAAAGGCTGGTGCAGAAAGTAGTAGACATCATTTTGAGGCAGACAGCAAGGAGAGAAGGAGAAAACAAAGGTGTGTCAGAACTGCAACATGcacatGGCACAAATGTAGAAAGTTCTGATCAAGAAGCAAATGTCAGTACTTTTACACCAAGCAAGATAATTCTGAcgggagaaaaaaagaaaactcttcACAAGGAGGAACTAACCATGAGTGAGAAAGAAAAAGTGTTAAAGGCCAAGACTGAGCATCATGCTGCGGTAATGCAGAAGAGGCGGAGTGGTGAAGGTGCAAAGAAAATGTTCAACAAAGAAGCTAAAGTGGCAAAACAACAGACTGTCATCAAGTCACAACAACAAGATCCTCAAGCAAACCTAAGTAAAGGTGAAGATAACCAAGTGTCAGCACAACCAGTTGTGAAACGAACAGAGAAGAAAGTGCGGCTTTCAACATCAGATGGAAAACAGTGCATGTTAACACTATCTGTAGATACGACATTTAAACAGCTTCAAGAGCTGATCGAAAAGGAGCTTGGGATACCAGCAGCACAGATACGAATCAGGTATGGGTTTCCACCCCGTGAGTTGCATCCTCCAAATGAGGGACTTGAAGAGGATCCACTTCCCCTGCAGCATGGTGACCGAATCATGGTGGAGCATTTAAAGCCATCTGTTCCTGAAGAGCAAACACCTGATGTCGTCATGTCAGAACTGAAGGCACAGGAAGGTGGAGTTAGTGATTCTCACGAGTCGTCAGTTCAAGATGAAGCAGAAAAGCAAAGACAAGCCATGGCATCTGTCCTTTTTAATGCTCTCAGTGCTATTGGAGGTAGTGATATGTGGGAAGCAGCGCAGAACTGCTATGAAATGTTTGAAAGAGGGGGAGTTTATTACAGCCAAGTCGTAAATGATCTCGGTCCTCTCCAGCCAAATCAGCATTTCACATTACCATTCTTTCCCAACAAGgtattTGCTTACAATGCAGATAAGGATCGTCTGGATTTGTGTCTTGGCCAGAGGCACATTCAAGTTCAGCCACTAGACGATGAAACATTACGACTGGCTCACACCCGCCCCACGCAAACCTCGACGAGTGAAAGAGCCAGCAGTCTGTCGACAGAGGCCAGCTTCAGTGGTGCTATTGGACACAGGGATACCACTCGCGCTCGTGTTGCATTTTCTGGAGAAGGTAGAACTCTGTCAAGTGCTTCATCTTCTCAAAGTGAGAGCGCAAAGGCTGAAGTACAGTTGTCCAGAGTCAGATCTCCTCAGACGGCTATGGATACCTCAGCGAGTGATTTTGAGAATGAAGTGTTTGCAAAAAGTAACAAGGAAATTCCAGATGAGGAAGTTGAGGAGGTCAACAAGGAAAGACAACTTGTTTCGGGATTAATTGTCTCCGAGGAAGTGGGCTTTACAAGAACTGAGCACGCAGCGGAAATGTTAGATGAGAGTCCAGCGACATTCACCCCGAGTACTTTGCAAGGAGGTGAAATACAATCGGCAGACGAACAGACTTCAGTAAGTGAAGAGggaaaaataaatgaaacaggAATGTCAGGGGAGATGGCTGTGGATAATGAGAACACGGATCATGTGGGGAATGATCATGAAGATGAACAAGGAATGGTTGTTGAGGGCCGTTTGGCTGAAATGCGGGACACCTTAAGAGAGGTTTCAGTGGAGCAGTTTGGTGAAAGTGTGGTAAATGGACTTGAAAATGTTGCTGGAATAGAAACTGAGAACATGGAAGCAAGCGTTGATCAAAGTTACAGGGACAGCAATGAGCGGGTTGTGAATCCTATTGATACGTCAAAAATGCATGAAGACCAAGTGGATGAACCCTCTTTGAGATCTACACGTGTCGACTCAGACGTAATGGAAACCGAACAGAGAACAGTTCAGGAAGACGGTGTGACTGACGATGTCACACAACCCATGCCTGATGATCAACTGGTGACTGGGGATGTCATTCAAGATGGAGTCAGCGGTGGTGTCATAGATTTGAACCCTGGAGAGGCTACGGTAGATCGTACTGATGATGGAGTAGCGATTCATGGATCGATTGCCATGGAGATTGACACTCAGAGTGAGACTATCGAATCGGGGTTAGTTCCGAATTCTGTTTGTGTAGCAGGTGACGTTCAGCCCGGAAGCGATTTATTACCGGAAGCGGAAatgaaaactgacaacaacgaaCTAAGCAACTGTGGAGACACATCACTTCTGCACAGTAAGGTTACGTTGTCAAGAACGGAAACAGGCAATGGTACCGTGTCATCTCAAGCTTCAGTAGCAGTAGGCGACAATCTAATGAAAGAGAATGAAACTGGAACAATTGCTGATAGTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CF97	Deubiquitinating protein VCPIP1 OS=Rattus norvegicus OX=10116 GN=Vcpip1 PE=1 SV=2
Q96JH7	Deubiquitinating protein VCPIP1 OS=Homo sapiens OX=9606 GN=VCPIP1 PE=1 SV=2
Q8CDG3	Deubiquitinating protein VCPIP1 OS=Mus musculus OX=10090 GN=Vcpip1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006679 (this species only) · gene tree & orthology
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19437 all species →	VCIP135_N	VCIP135 N-terminal	Domain	Interproscan
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan
PF21403 all species →	OTU1_UBXL	OTU1, UBXL domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039087 all species →	Family	Deubiquitinating protein VCPIP1	Interproscan
IPR045827 all species →	Domain	Deubiquitinating protein VCPIP1, N-terminal	Interproscan
IPR048857 all species →	Domain	OTU1, Ubl domain	Interproscan
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14843 all species →	DEUBIQUITINATING PROTEIN VCIP135	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016320 all species →	Biological Process	endoplasmic reticulum membrane fusion	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0035871 all species →	Biological Process	protein K11-linked deubiquitination	Interproscan
GO:0071108 all species →	Biological Process	protein K48-linked deubiquitination	Interproscan
GO:0090168 all species →	Biological Process	Golgi reassembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11861	VCPIP1, VCIP135; deubiquitinating protein VCIP135	EC:3.4.19.12	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g10331.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

41.5Max TPM

14.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	13.27	36.09
whole organisms · low pH treatment	15	15	16.82	41.45
whole organisms · extra low pH treatment pH treatment	12	12	15.07	41.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	36.09
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	33.89
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	29.44
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	22.37
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	17.48
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	15.18
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	14.92
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	13.27
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	13.18
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	12.94
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	12.85
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	12.68
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	10.28
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	9.00
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	7.11
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	6.26
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	3.86
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	3.14
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.38
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	1.99
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.46
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	41.45
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	41.20
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	35.96
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	19.14
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	18.46
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	17.44
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	16.99
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	12.98
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	11.95
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.35
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	9.39
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	8.88
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	3.87
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.36
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.94
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	41.53
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	32.14
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	18.32
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	15.50
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	15.29
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	14.07
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	13.21
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	13.00
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	10.72
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.04
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.52
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	1.45

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.