Detailed information of g1034.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: PFX25506.1, Uncharacterized protein C12orf4-like [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q91YN0FERRY endosomal RAB5 effector complex subunit 3 OS=Mus musculus OX=10090 GN=Ferry3 PE=1 SV=1
Q9NQ89Ferry endosomal RAB5 effector complex subunit 3 OS=Homo sapiens OX=9606 GN=FERRY3 PE=1 SV=1
Q5RD58FERRY endosomal RAB5 effector complex subunit 3 OS=Pongo abelii OX=9601 GN=FERRY3 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyDUB|USP|USP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00886Ribosomal_S16Ribosomal protein S16FamilyInterproscan
PF00448SRP54SRP54-type protein, GTPase domainDomainInterproscan
PF02978SRP_SPBSignal peptide binding domainDomainInterproscan
PF16057DUF4800Domain of unknown function (DUF4800)FamilyInterproscan
PF10154DUF2362Uncharacterised conserved protein (DUF2362)FamilyInterproscan
PF00443UCHUbiquitin carboxyl-terminal hydrolaseFamilyInterproscan
PF01858RB_ARetinoblastoma-associated protein A domainDomainInterproscan
PF01857RB_BRetinoblastoma-associated protein B domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036891Homologous_superfamilySignal recognition particle, SRP54 subunit, M-domain superfamilyInterproscan
IPR000897DomainSignal recognition particle, SRP54 subunit, GTPase domainInterproscan
IPR000307FamilySmall ribosomal subunit protein bS16Interproscan
IPR022941FamilySignal recognition particle, SRP54 subunitInterproscan
IPR023803Homologous_superfamilySmall ribosomal subunit protein bS16 domain superfamilyInterproscan
IPR004780FamilySignal recognition particle proteinInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR004125DomainSignal recognition particle, SRP54 subunit, M-domainInterproscan
IPR019311FamilyProtein of unknown function DUF2362Interproscan
IPR052398FamilyInactive ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR001394DomainPeptidase C19, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR028889DomainUbiquitin specific protease domainInterproscan
IPR036915Homologous_superfamilyCyclin-like superfamilyInterproscan
IPR028309FamilyRetinoblastoma protein familyInterproscan
IPR002720DomainRetinoblastoma-associated protein, A-boxInterproscan
IPR002719DomainRetinoblastoma-associated protein, B-boxInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11564SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54Interproscan
PTHR16525UNCHARACTERIZEDInterproscan
PTHR22975UBIQUITIN SPECIFIC PROTEINASEInterproscan
PTHR13742RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membraneInterproscan
GO:0008312Molecular Function7S RNA bindingInterproscan
GO:0048500Cellular Componentsignal recognition particleInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0016579Biological Processprotein deubiquitinationInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0051726Biological Processregulation of cell cycleInterproscan
GO:2000134Biological Processnegative regulation of G1/S transition of mitotic cell cycleInterproscan
GO:0005634Cellular ComponentnucleusInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03106SRP54, ffh; signal recognition particle subunit SRP54EC:3.6.5.4
Secretion systemko02044deepkoala

TOP