Gene detail

Detailed information of g1038.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_050565034.1, succinate--hydroxymethylglutarate CoA-transferase isoform X8 [Cygnus atratus]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TNE1	Succinyl-CoA:glutarate CoA-transferase OS=Mus musculus OX=10090 GN=Sugct PE=1 SV=2
Q68FU4	Succinyl-CoA:glutarate CoA-transferase OS=Rattus norvegicus OX=10116 GN=Sugct PE=2 SV=1
Q9HAC7	Succinyl-CoA:glutarate CoA-transferase OS=Homo sapiens OX=9606 GN=SUGCT PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only)
Orthogroup (gene family)	OG0000016 (this species only)
Orthogroup (gene family)	OG0000038 (this species only)
Orthogroup (gene family)	OG0000145 (this species only)
Orthogroup (gene family)	OG0000473 (this species only)
Orthogroup (gene family)	OG0000946 (this species only)
Orthogroup (gene family)	OG0002500 (this species only)
Orthogroup (gene family)	OG0003067 (this species only)
Orthogroup (gene family)	OG0003969 (this species only)
Orthogroup (gene family)	OG0006305 (this species only)
Orthogroup (gene family)	OG0006428 (this species only)
Orthogroup (gene family)	OG0007420 (this species only)
Orthogroup (gene family)	OG0170792 (this species only)
Orthogroup (gene family)	OG0172323 (this species only)
Orthogroup (gene family)	OG0173936 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03357 all species →	Snf7	Snf7	Family	Interproscan
PF16543 all species →	DFRP_C	DRG Family Regulatory Proteins, Tma46	Domain	Interproscan
PF01842 all species →	ACT	ACT domain	Domain	Interproscan
PF00351 all species →	Biopterin_H	Biopterin-dependent aromatic amino acid hydroxylase	Domain	Interproscan
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00764 all species →	Arginosuc_synth	Arginosuccinate synthase N-terminal HUP domain	Domain	Interproscan
PF20979 all species →	Arginosuc_syn_C	Arginosuccinate synthase C-terminal domain	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF02515 all species →	CoA_transf_3	CoA-transferase family III	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005024 all species →	Family	Snf7 family	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR032378 all species →	Domain	ZC3H15/TMA46 family, C-terminal	Interproscan
IPR019774 all species →	Domain	Aromatic amino acid hydroxylase, C-terminal	Interproscan
IPR002912 all species →	Domain	ACT domain	Interproscan
IPR036329 all species →	Homologous_superfamily	Aromatic amino acid monoxygenase, C-terminal domain superfamily	Interproscan
IPR045865 all species →	Homologous_superfamily	ACT-like domain	Interproscan
IPR001273 all species →	Family	Aromatic amino acid hydroxylase	Interproscan
IPR036951 all species →	Homologous_superfamily	Aromatic amino acid hydroxylase superfamily	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR050653 all species →	Family	Protease Inhibitors and Growth Factor Antagonists	Interproscan
IPR018223 all species →	Conserved_site	Argininosuccinate synthase, conserved site	Interproscan
IPR001518 all species →	Family	Argininosuccinate synthase	Interproscan
IPR024074 all species →	Homologous_superfamily	Argininosuccinate synthetase, catalytic/multimerisation domain body	Interproscan
IPR023434 all species →	Family	Argininosuccinate synthase, type 1 subfamily	Interproscan
IPR048267 all species →	Domain	Arginosuccinate synthase-like, N-terminal domain	Interproscan
IPR048268 all species →	Domain	Arginosuccinate synthase C-terminal domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR051485 all species →	Family	SR-related and CTD-associated factor	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003673 all species →	Family	CoA-transferase family III	Interproscan
IPR050483 all species →	Family	CoA-transferase III domain-containing protein	Interproscan
IPR023606 all species →	Homologous_superfamily	CoA-transferase family III domain 1 superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR052510 all species →	Family	Oomycete RxLR Effector	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22761 all species →	CHARGED MULTIVESICULAR BODY PROTEIN	Interproscan
PTHR12681 all species →	ZINC FINGER-CONTAINING PROTEIN P48ZNF	Interproscan
PTHR11473 all species →	AROMATIC AMINO ACID HYDROXYLASE	Interproscan
PTHR10913 all species →	FOLLISTATIN-RELATED	Interproscan
PTHR11587 all species →	ARGININOSUCCINATE SYNTHASE	Interproscan
PTHR23140 all species →	RNA PROCESSING PROTEIN LD23810P	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR48207 all species →	SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR45895 all species →	INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007034 all species →	Biological Process	vacuolar transport	Interproscan
GO:0005771 all species →	Cellular Component	multivesicular body	Interproscan
GO:0006900 all species →	Biological Process	vesicle budding from membrane	Interproscan
GO:0032511 all species →	Biological Process	late endosome to vacuole transport via multivesicular body sorting pathway	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016714 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0009072 all species →	Biological Process	aromatic amino acid metabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0004055 all species →	Molecular Function	argininosuccinate synthase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006526 all species →	Biological Process	L-arginine biosynthetic process	Interproscan
GO:0000050 all species →	Biological Process	urea cycle	Interproscan
GO:0000053 all species →	Biological Process	argininosuccinate metabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01940	argG, ASS1; argininosuccinate synthase	EC:6.3.4.5	Exosome	ko04147	deepkoala
K12198	CHMP5, VPS60; charged multivesicular body protein 5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.