Gene detail

Detailed information of g1044.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_047145070.1, RNA polymerase II-associated protein 3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q28IV3	RNA polymerase II-associated protein 3 OS=Xenopus tropicalis OX=8364 GN=rpap3 PE=2 SV=1
Q5ZKQ3	RNA polymerase II-associated protein 3 OS=Gallus gallus OX=9031 GN=RPAP3 PE=2 SV=1
O16259	Stress-induced-phosphoprotein 1 OS=Caenorhabditis elegans OX=6239 GN=sti-1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13877	RPAP3_C	Potential Monad-binding region of RPAP3	Domain	Interproscan
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF07883	Cupin_2	Cupin domain	Domain	Interproscan
PF16036	Chalcone_3	Chalcone isomerase-like	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF00701	DHDPS	Dihydrodipicolinate synthetase family	Domain	Interproscan
PF01263	Aldose_epim	Aldose 1-epimerase	Family	Interproscan
PF05380	Peptidase_A17	Pao retrotransposon peptidase	Family	Interproscan
PF04564	U-box	U-box domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR051320	Family	Viral Replication and Maturation Polyprotein	Interproscan
IPR025986	Domain	RNA-polymerase II-associated protein 3-like, C-terminal domain	Interproscan
IPR051966	Family	RNA polymerase II-associated protein 3	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR016088	Homologous_superfamily	Chalcone isomerase, 3-layer sandwich	Interproscan
IPR016089	Homologous_superfamily	Chalcone isomerase, orthogonal bundle domain superfamily	Interproscan
IPR013096	Domain	Cupin 2, conserved barrel	Interproscan
IPR011051	Homologous_superfamily	RmlC-like cupin domain superfamily	Interproscan
IPR036298	Homologous_superfamily	Chalcone isomerase superfamily	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan
IPR016087	Domain	Chalcone isomerase	Interproscan
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR035531	Domain	GTP binding protein 1-like, GTP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR050055	Family	Elongation factor Tu GTPase	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR009001	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR002220	Family	DapA-like	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR015443	Family	Aldose 1-epimerase	Interproscan
IPR011013	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR047215	Family	Galactose mutarotase-like	Interproscan
IPR018052	Conserved_site	Aldose 1-epimerase, conserved site	Interproscan
IPR014718	Homologous_superfamily	Glycoside hydrolase-type carbohydrate-binding	Interproscan
IPR008183	Family	Aldose 1-/Glucose-6-phosphate 1-epimerase	Interproscan
IPR008042	Family	Retrotransposon, Pao	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003613	Domain	U-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33064	POL PROTEIN	Interproscan
PTHR46423	RNA POLYMERASE II-ASSOCIATED PROTEIN 3	Interproscan
PTHR47698	FATTY-ACID-BINDING PROTEIN 3, CHLOROPLASTIC	Interproscan
PTHR43721	ELONGATION FACTOR TU-RELATED	Interproscan
PTHR12128	DIHYDRODIPICOLINATE SYNTHASE	Interproscan
PTHR10091	ALDOSE-1-EPIMERASE	Interproscan
PTHR46803	E3 UBIQUITIN-PROTEIN LIGASE CHIP	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0101031	Cellular Component	protein folding chaperone complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016872	Molecular Function	intramolecular lyase activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0008700	Molecular Function	(R,S)-4-hydroxy-2-oxoglutarate aldolase activity	Interproscan
GO:0009436	Biological Process	glyoxylate catabolic process	Interproscan
GO:0016829	Molecular Function	lyase activity	Interproscan
GO:0016853	Molecular Function	isomerase activity	Interproscan
GO:0019318	Biological Process	hexose metabolic process	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan
GO:0004034	Molecular Function	aldose 1-epimerase activity	Interproscan
GO:0006006	Biological Process	glucose metabolic process	Interproscan
GO:0033499	Biological Process	galactose catabolic process via UDP-galactose	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006515	Biological Process	protein quality control for misfolded or incompletely synthesized proteins	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0045862	Biological Process	positive regulation of proteolysis	Interproscan
GO:0051087	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071218	Biological Process	cellular response to misfolded protein	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01785	galM, GALM; aldose 1-epimerase	EC:5.1.3.3	Transcription machinery	ko03021	deepkoala
K01785	galM, GALM; aldose 1-epimerase	EC:5.1.3.3	Galactose metabolism	ko00052	deepkoala