Gene detail

Detailed information of g1045.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_047146535.1, GRAM domain-containing protein 4 [Hydra vulgaris]
Species abbreviation CCRUX · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55112	Zinc metalloproteinase nas-4 OS=Caenorhabditis elegans OX=6239 GN=nas-4 PE=2 SV=4
P55115	Zinc metalloproteinase nas-15 OS=Caenorhabditis elegans OX=6239 GN=nas-15 PE=2 SV=2
Q1LW01	Hatching enzyme 1.2 OS=Danio rerio OX=7955 GN=he1.2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000031 (this species only)
Orthogroup (gene family)	OG0000041 (this species only)
Orthogroup (gene family)	OG0000323 (this species only)
Orthogroup (gene family)	OG0000834 (this species only)
Orthogroup (gene family)	OG0001277 (this species only)
Orthogroup (gene family)	OG0002180 (this species only)
Orthogroup (gene family)	OG0003018 (this species only)
Orthogroup (gene family)	OG0003053 (this species only)
Orthogroup (gene family)	OG0003762 (this species only)
Orthogroup (gene family)	OG0004575 (this species only)
Orthogroup (gene family)	OG0004692 (this species only)
Orthogroup (gene family)	OG0007696 (this species only)
Orthogroup (gene family)	OG0008016 (this species only)
Orthogroup (gene family)	OG0171338 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00389 all species →	2-Hacid_dh	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Domain	Interproscan
PF02826 all species →	2-Hacid_dh_C	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	Domain	Interproscan
PF17921 all species →	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF05881 all species →	CNPase	2',3'-cyclic nucleotide 3'-phosphodiesterase (CNP or CNPase)	Family	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF07474 all species →	G2F	G2F domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF04869 all species →	Uso1_p115_head	Uso1 / p115 like vesicle tethering protein, head region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029753 all species →	Conserved_site	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site	Interproscan
IPR050223 all species →	Family	D-isomer specific 2-hydroxyacid dehydrogenase	Interproscan
IPR006139 all species →	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Interproscan
IPR006140 all species →	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR041588 all species →	Domain	Integrase zinc-binding domain	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR047325 all species →	Domain	Cyclic nucleotide phosphodiesterase, catalytic domain	Interproscan
IPR008431 all species →	Family	Cyclic nucleotide phosphodiesterase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009097 all species →	Homologous_superfamily	Cyclic phosphodiesterase	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051566 all species →	Family	Connector enhancer of kinase suppressor of Ras	Interproscan
IPR009017 all species →	Homologous_superfamily	Green fluorescent protein	Interproscan
IPR006605 all species →	Domain	G2 nidogen/fibulin G2F	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR006953 all species →	Domain	Vesicle tethering protein Uso1/P115-like, head domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10996 all species →	2-HYDROXYACID DEHYDROGENASE-RELATED	Interproscan
PTHR22955 all species →	RETROTRANSPOSON	Interproscan
PTHR10127 all species →	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan
PTHR24096 all species →	LONG-CHAIN-FATTY-ACID--COA LIGASE	Interproscan
PTHR10156 all species →	2',3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE	Interproscan
PTHR12844 all species →	CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS	Interproscan
PTHR22903 all species →	PLEKHH PROTEIN	Interproscan
PTHR24171 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED	Interproscan
PTHR21301 all species →	REVERSE TRANSCRIPTASE	Interproscan
PTHR10013 all species →	GENERAL VESICULAR TRANSPORT FACTOR P115	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008465 all species →	Molecular Function	hydroxypyruvate reductase (NADH) activity	Interproscan
GO:0016618 all species →	Molecular Function	hydroxypyruvate reductase [NAD(P)H] activity	Interproscan
GO:0030267 all species →	Molecular Function	glyoxylate reductase (NADPH) activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016405 all species →	Molecular Function	CoA-ligase activity	Interproscan
GO:0004113 all species →	Molecular Function	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009214 all species →	Biological Process	cyclic nucleotide catabolic process	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0031436 all species →	Cellular Component	BRCA1-BARD1 complex	Interproscan
GO:0070531 all species →	Cellular Component	BRCA1-A complex	Interproscan
GO:0085020 all species →	Biological Process	protein K6-linked ubiquitination	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005795 all species →	Cellular Component	Golgi stack	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0012507 all species →	Cellular Component	ER to Golgi transport vesicle membrane	Interproscan
GO:0045056 all species →	Biological Process	transcytosis	Interproscan
GO:0048211 all species →	Biological Process	Golgi vesicle docking	Interproscan
GO:0061025 all species →	Biological Process	membrane fusion	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0048280 all species →	Biological Process	vesicle fusion with Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00049	GRHPR; glyoxylate/hydroxypyruvate reductase	EC:1.1.1.79 EC:1.1.1.81	Glycine, serine and threonine metabolism	ko00260	deepkoala
K01904	4CL; 4-coumarate--CoA ligase	EC:6.2.1.12	Phenylpropanoid biosynthesis	ko00940	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.