Detailed information of g105.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NOU13221.1, DUF3047 domain-containing protein [Methylococcaceae bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P10155RNA-binding protein RO60 OS=Homo sapiens OX=9606 GN=RO60 PE=1 SV=2
P42700RNA-binding protein RO60 OS=Xenopus laevis OX=8355 GN=ro60 PE=1 SV=1
O08848RNA-binding protein Ro60 OS=Mus musculus OX=10090 GN=RO60 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11249DUF3047Protein of unknown function (DUF3047)FamilyInterproscan
PF02525Flavodoxin_2Flavodoxin-like foldDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF05731TROVETROVE domainDomainInterproscan
PF02145Rap_GAPRap/ran-GAPFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR021409FamilyProtein of unknown function DUF3047Interproscan
IPR029039Homologous_superfamilyFlavoprotein-like superfamilyInterproscan
IPR003680DomainFlavodoxin-like foldInterproscan
IPR051545FamilyNAD(P)H dehydrogenase (quinone)Interproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR040322FamilyRNA-binding protein RO60Interproscan
IPR008858DomainTROVE domainInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR037214Homologous_superfamilyTROVE domain superfamilyInterproscan
IPR035974Homologous_superfamilyRap/Ran-GAP superfamilyInterproscan
IPR000331DomainRap/Ran-GAP domainInterproscan
IPR027107FamilyTuberin/Ral GTPase-activating protein subunit alphaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10204NAD P H OXIDOREDUCTASE-RELATEDInterproscan
PTHR24023COLLAGEN ALPHAInterproscan
PTHR1420260 KDA RIBONUCLEOPROTEIN SSA/ROInterproscan
PTHR10063TUBERINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003955Molecular FunctionNAD(P)H dehydrogenase (quinone) activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0051056Biological Processregulation of small GTPase mediated signal transductionInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0032007Biological Processnegative regulation of TOR signalingInterproscan
GO:0033596Cellular ComponentTSC1-TSC2 complexInterproscan
GO:0043547Biological Processpositive regulation of GTPase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00355NQO1; NAD(P)H dehydrogenase (quinone)EC:1.6.5.2
Systemic lupus erythematosusko05322deepkoala
Fluid shear stress and atherosclerosisko05418deepkoala

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