Gene detail

Detailed information of g10507.t1 in Acropora digitifera

Genomic Location: chr5Alt:3778687...3801541
NR annotation: XP_029203712.2, TBC1 domain family member 1-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10507.t1

ATGGATGCAGGGTCGGAAGGGGAGCCAAAGAATGAGGAAAAGCAGCTACGTTTGCGTTCCAAAAGAACTGCGACAGATACAAACCAATTTACCATGTCTAATTCGCTAGACAGTGGTGTTGGAAGCTTCGATGAATCGGACTTATCGGAAAAATCGTGCATGAAAAATGACCATCAATCAGAGAAATCTCGCATGGAGGAACGATCGACCGCTAAAGGCCTTCTACATCAAGGAGCGAGCTCTTTCCGTTTCATCTACCTCGGTTCTGCAGTGTTGGACAAAAGATACACTCAAGCGATGCTTCCGTGGGTTATCGCAGAGGTCAGGAGAAAAAAAGAGCGAGTTTCGATTGTTCTGAACGTCGAGGCAATGACAGTGAAAGCCATCGATGGTTCAGGCAATACCTTGTTTCAACACGAAGTGCAGATAATCACTCGCTGTGCTCTCTCTGTGGACAAGAAATGCTTTTCCTACCTGACCAAGGTCTCTGGTGATGTTTCTTCCTGTCAAAGTTACGTTTTTGAGGCTGTTGAGCCGAGCTCGGTGAATGGTTTTCTACAAGGCATCCGTGATGCTGCCAAACAGGGTGTTGACCAGAGCACTCTAACAGCAAAGGAAAATGGAGTAGAGGATTCATCGTCACCTATAAATAACAGCAGCTTAGATTCACAAGCTGAGACGTCTAGTGAAAACTTGGCGGTGATTTTTCCTTTGTGGTACATGGGTAAGGTAATGGTGTCACATAGGCAAGCTCCACCCACACTGATAGATGATTTGGTTGAGAGATTTCATAAGAGACTGGGGATGTCTGACTCAGAGAAACAAATGAGAGTGACGAAAGAAGAACAAAGAGTGGCTTCACCTTGCCCAGATGTCAACATGGAGAGTCACGGTAGGGAGCGTCTTCTGGCAAAGGCCAGCAGTTTTGATAGTGCTCAAATATTGCAGGAAGAACCAAAAATTGCTGAAGAGAAGACCGAAGAACTTAGTAGCAGTAGAATGCAACTTCTGAGTGCTAACAGCAATTCTGGTGGTCGTCCAAGGTCGGTGAGTGATGGTGACAAAATGAAAGAGCTGTACTCTTCAAAGGTCCATGGGAACTCTAGCAACCAGCACTGTGGCACTAGCATGCAAACCAGACATTCTAGCCATCACGCAGGAGAAAACAGGAATGTTCTGTTCAAGGTCACCGTTCACTCATTGTCTTGTCTGAGTGTGACGACAAAGCAACAGCTAATGGAGAGGAGGTTGAGAGAAGTGTCTTTCTGTCAGCAGGGGTCTAAGTCGCCAGAGCACTTTGGTTTCATTTGCCATGATTCAAGAAGTGGACAGTACAACTGCTATGTGTTCAAGGGACAGTCTGAACAACTGGTGGATGATGTTATGCAGTCACTTCGACAAGCTTTCAACTCTGCTTGGCAGGCGGCGGGTCCATCAGCTGTTTGTGACATGTGCCCGCTCCACCAACTTCATCAACTTTGTGTCCAACTTGATGGTCGCACCGTCAAACAACAGTACGACATACTGCAACGGCACAGAATCAATCTAACAGATGAGGAGATGAGTGAATTTACAGAAATTTTTAAAGCTGAGAGTCCTGCACCAGGCATGAGTGAGGAGAATGAAGTCATTATGGCCATCTTTAGAGGGATATATGAACAACGGCAAAAGCAGCACACACACATTGGCCAGGGCAACCCGAATCAGAAAAACAGGGAGGGATCAAATCTGCTTCAGAAAGCCAAGAAATCTTTGTCCAGCTCCTTTGGAAGTTTCATGAGCAAAAGGGGAAAGCCCCGAACGATAGAGGAAGTAAATGAAATGGAAAAGTGTGAATCAGAAAAACTGTCACCAACTATCCTCAGAAGACGCAGTGCAACTGTTGATACAGTTGCACACTCAGCACACACCCAGCCCGTGACCCCTCTCAAAGAGTCTTCCTCACACAAAGAAGATGAGGTACTCACCAGTACTCCCCACAAACATGCGAAACAAGTCCCTCCCCTGCAGGCGGGGGAAGGCAGTCCATCGCACCTCAGCAAGAAGCCATCGGGGTCAACTTCAAGTCCACCGTCAACTCCAACGAAAACACCTCAGGGTCACCACCGGAGACTCAGCAGACATAATTCCTATGGATACAGACAGGCAATTTTTCATAGTGTGGTCACGCCGTCCAAGAAGGAAACTGCCATTTCAGACCAAGACTTGGGCGTGGTACCTCAGAGTGCCTCGTGGGCGGAAATGGTGGGGCGTAGTCGATCAGCGGCAGAGCTGAGGGCATTGTGGAGGAAAGCCATCATGGAGCAGATTTTGCTTATCAGGATGGAAAAAGAGAACACTAGTTTGGAAGTGAATGTCAACGAAATCGAGACCAACCAGCTGAAGCTTTCCTACAAGGAAATCTCACCTTGCTCTGAATCTGCGGCAACAAACTGGAAGACGATCCTCGAGAAGGGAGATGTTCCTGTTGACAAAAGAGTGTTGCTTGACGCGGTCAAAGCTGGTGTGCCAAAAACCAGGAGGGGAGAAATCTGGAGATTTTTGGCCAAGCAGCACGAGTTTTATTCACCACTGCCTGAATACAAGCCATGGATGCAAAAATCCTTCGAGGAGCTGAAGGAAGTGTCTTCCAGTCACCAGCACTCCATATTTATTGACTTAGGTCGCACATTCCCCAGTCACCCATATTTTGCCGCCCAGCTGGGTCGTGGTCAACTCTGTTTGTTCAATGTCTTAAAAGCTTACTCCGTATTGGACGAAGAAGTTGGATACTGTCAGGGGCTGAGCTTCGTGGCAGGGATTCTGTTGATGCACATGAGGGAAGCTGAAGCATTTGATATGCTAAGGTTTATCTTGTACACTCTGCAGGTTCGGACGCAGTACAAACCCGATATGCAAAAGCTACAGACTCAGTTCTACATGTTGTCCAGGCTTTTTCACGACTACTACAAACCGGTTTACGAGTTTCTTCTGGAGTGTGAAATTTCTCCTACACTTTATGCTGCCCCGTGGTTCCTCACGCTTTTTGCATCTCACTTCCCGATAGGCTTTGTTGTACGAGTGCTTGACATGATGTTCCTTCAAGGGATGGAGGTCATATTCAAGGTCATCTTGTTGCTGCTCGGCTCTTGTCAAGAAGAGTTGTTGGCCAGTGATGGCCTGGAAGGCGCGGTGGAAGTTATCAAATTGTCAGTGCCTCCCTTTGCAGAAGAGCATGTCGAGTGGCTGGTAGATAAAGCCCTTTCTCTTGATGTTAGCAAAGATCTGGAGTCATATGAAGTTGAATATTGTGTGTTCAAGGAGGAGGATCTGAGTGTTACTGAATTTGAAGACATAGAAAGTGAGAAGGTGGAATGTCTCGAGGCTGAACTAGAAATCAAAACAAAACAGATTCAACATTTGAACGAGCAGCTGTCATCTGCGCGACACGCGATTGATGGACTTGAAAGCACAATTAACACAATGCAAATCAATCAGACGGAGTTACTGAATTTCATACGATCGCTGAAAGCTGAGAACGAATCCCTGAAAAAGAATTTTGAAAAACTCAAAGATAAGGTGCTTGCCAATGGCGACGTGGCGCCAGAAGTTGCCGAAGTTGACGAACAGGACACGATTGAGGATTCATTGACCGACTGCAAAACGACTTGTGCCGAAATGAACGCAAGCTTTACCGAAGAAAACACGGACAGTTTCGAGCATATTGGCAGTGCAGAGGAGCTTTCTGACCACGAAGCCGTGGACGAGATCCATGAAGAGACGACTGACGCGACGGGAACCGCACTCGCTCTCAGTAACAAGTGCGAGGACCTGGTAGTTAGTAGATAA

Transcript

chr5Alt.g10507.t1

GTGCACCACGCATGTTCTCCGGTTTGCTCTCGCATTTCTGATGGATGCAGGGTCGGAAGGGGAGCCAAAGAATGAGGAAAAGCAGCTACGTTTGCGTTCCAAAAGAACTGCGACAGATACAAACCAATTTACCATGTCTAATTCGCTAGACAGTGGTGTTGGAAGCTTCGATGAATCGGACTTATCGGAAAAATCGTGCATGAAAAATGACCATCAATCAGAGAAATCTCGCATGGAGGAACGATCGACCGCTAAAGGCCTTCTACATCAAGGAGCGAGCTCTTTCCGTTTCATCTACCTCGGTTCTGCAGTGTTGGACAAAAGATACACTCAAGCGATGCTTCCGTGGGTTATCGCAGAGGTCAGGAGAAAAAAAGAGCGAGTTTCGATTGTTCTGAACGTCGAGGCAATGACAGTGAAAGCCATCGATGGTTCAGGCAATACCTTGTTTCAACACGAAGTGCAGATAATCACTCGCTGTGCTCTCTCTGTGGACAAGAAATGCTTTTCCTACCTGACCAAGGTCTCTGGTGATGTTTCTTCCTGTCAAAGTTACGTTTTTGAGGCTGTTGAGCCGAGCTCGGTGAATGGTTTTCTACAAGGCATCCGTGATGCTGCCAAACAGGGTGTTGACCAGAGCACTCTAACAGCAAAGGAAAATGGAGTAGAGGATTCATCGTCACCTATAAATAACAGCAGCTTAGATTCACAAGCTGAGACGTCTAGTGAAAACTTGGCGGTGATTTTTCCTTTGTGGTACATGGGTAAGGTAATGGTGTCACATAGGCAAGCTCCACCCACACTGATAGATGATTTGGTTGAGAGATTTCATAAGAGACTGGGGATGTCTGACTCAGAGAAACAAATGAGAGTGACGAAAGAAGAACAAAGAGTGGCTTCACCTTGCCCAGATGTCAACATGGAGAGTCACGGTAGGGAGCGTCTTCTGGCAAAGGCCAGCAGTTTTGATAGTGCTCAAATATTGCAGGAAGAACCAAAAATTGCTGAAGAGAAGACCGAAGAACTTAGTAGCAGTAGAATGCAACTTCTGAGTGCTAACAGCAATTCTGGTGGTCGTCCAAGGTCGGTGAGTGATGGTGACAAAATGAAAGAGCTGTACTCTTCAAAGGTCCATGGGAACTCTAGCAACCAGCACTGTGGCACTAGCATGCAAACCAGACATTCTAGCCATCACGCAGGAGAAAACAGGAATGTTCTGTTCAAGGTCACCGTTCACTCATTGTCTTGTCTGAGTGTGACGACAAAGCAACAGCTAATGGAGAGGAGGTTGAGAGAAGTGTCTTTCTGTCAGCAGGGGTCTAAGTCGCCAGAGCACTTTGGTTTCATTTGCCATGATTCAAGAAGTGGACAGTACAACTGCTATGTGTTCAAGGGACAGTCTGAACAACTGGTGGATGATGTTATGCAGTCACTTCGACAAGCTTTCAACTCTGCTTGGCAGGCGGCGGGTCCATCAGCTGTTTGTGACATGTGCCCGCTCCACCAACTTCATCAACTTTGTGTCCAACTTGATGGTCGCACCGTCAAACAACAGTACGACATACTGCAACGGCACAGAATCAATCTAACAGATGAGGAGATGAGTGAATTTACAGAAATTTTTAAAGCTGAGAGTCCTGCACCAGGCATGAGTGAGGAGAATGAAGTCATTATGGCCATCTTTAGAGGGATATATGAACAACGGCAAAAGCAGCACACACACATTGGCCAGGGCAACCCGAATCAGAAAAACAGGGAGGGATCAAATCTGCTTCAGAAAGCCAAGAAATCTTTGTCCAGCTCCTTTGGAAGTTTCATGAGCAAAAGGGGAAAGCCCCGAACGATAGAGGAAGTAAATGAAATGGAAAAGTGTGAATCAGAAAAACTGTCACCAACTATCCTCAGAAGACGCAGTGCAACTGTTGATACAGTTGCACACTCAGCACACACCCAGCCCGTGACCCCTCTCAAAGAGTCTTCCTCACACAAAGAAGATGAGGTACTCACCAGTACTCCCCACAAACATGCGAAACAAGTCCCTCCCCTGCAGGCGGGGGAAGGCAGTCCATCGCACCTCAGCAAGAAGCCATCGGGGTCAACTTCAAGTCCACCGTCAACTCCAACGAAAACACCTCAGGGTCACCACCGGAGACTCAGCAGACATAATTCCTATGGATACAGACAGGCAATTTTTCATAGTGTGGTCACGCCGTCCAAGAAGGAAACTGCCATTTCAGACCAAGACTTGGGCGTGGTACCTCAGAGTGCCTCGTGGGCGGAAATGGTGGGGCGTAGTCGATCAGCGGCAGAGCTGAGGGCATTGTGGAGGAAAGCCATCATGGAGCAGATTTTGCTTATCAGGATGGAAAAAGAGAACACTAGTTTGGAAGTGAATGTCAACGAAATCGAGACCAACCAGCTGAAGCTTTCCTACAAGGAAATCTCACCTTGCTCTGAATCTGCGGCAACAAACTGGAAGACGATCCTCGAGAAGGGAGATGTTCCTGTTGACAAAAGAGTGTTGCTTGACGCGGTCAAAGCTGGTGTGCCAAAAACCAGGAGGGGAGAAATCTGGAGATTTTTGGCCAAGCAGCACGAGTTTTATTCACCACTGCCTGAATACAAGCCATGGATGCAAAAATCCTTCGAGGAGCTGAAGGAAGTGTCTTCCAGTCACCAGCACTCCATATTTATTGACTTAGGTCGCACATTCCCCAGTCACCCATATTTTGCCGCCCAGCTGGGTCGTGGTCAACTCTGTTTGTTCAATGTCTTAAAAGCTTACTCCGTATTGGACGAAGAAGTTGGATACTGTCAGGGGCTGAGCTTCGTGGCAGGGATTCTGTTGATGCACATGAGGGAAGCTGAAGCATTTGATATGCTAAGGTTTATCTTGTACACTCTGCAGGTTCGGACGCAGTACAAACCCGATATGCAAAAGCTACAGACTCAGTTCTACATGTTGTCCAGGCTTTTTCACGACTACTACAAACCGGTTTACGAGTTTCTTCTGGAGTGTGAAATTTCTCCTACACTTTATGCTGCCCCGTGGTTCCTCACGCTTTTTGCATCTCACTTCCCGATAGGCTTTGTTGTACGAGTGCTTGACATGATGTTCCTTCAAGGGATGGAGGTCATATTCAAGGTCATCTTGTTGCTGCTCGGCTCTTGTCAAGAAGAGTTGTTGGCCAGTGATGGCCTGGAAGGCGCGGTGGAAGTTATCAAATTGTCAGTGCCTCCCTTTGCAGAAGAGCATGTCGAGTGGCTGGTAGATAAAGCCCTTTCTCTTGATGTTAGCAAAGATCTGGAGTCATATGAAGTTGAATATTGTGTGTTCAAGGAGGAGGATCTGAGTGTTACTGAATTTGAAGACATAGAAAGTGAGAAGGTGGAATGTCTCGAGGCTGAACTAGAAATCAAAACAAAACAGATTCAACATTTGAACGAGCAGCTGTCATCTGCGCGACACGCGATTGATGGACTTGAAAGCACAATTAACACAATGCAAATCAATCAGACGGAGTTACTGAATTTCATACGATCGCTGAAAGCTGAGAACGAATCCCTGAAAAAGAATTTTGAAAAACTCAAAGATAAGGTGCTTGCCAATGGCGACGTGGCGCCAGAAGTTGCCGAAGTTGACGAACAGGACACGATTGAGGATTCATTGACCGACTGCAAAACGACTTGTGCCGAAATGAACGCAAGCTTTACCGAAGAAAACACGGACAGTTTCGAGCATATTGGCAGTGCAGAGGAGCTTTCTGACCACGAAGCCGTGGACGAGATCCATGAAGAGACGACTGACGCGACGGGAACCGCACTCGCTCTCAGTAACAAGTGCGAGGACCTGGTAGTTAGTAGATAAGCCCAGCCCAAAGTGTCGTCAGATATGTATCATCAGTGGTGGGTGTAAATTTATCCCCTATGGCTGCAAAGAAAAGAGCCAAACG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60343	TBC1 domain family member 4 OS=Homo sapiens OX=9606 GN=TBC1D4 PE=1 SV=2
Q86TI0	TBC1 domain family member 1 OS=Homo sapiens OX=9606 GN=TBC1D1 PE=1 SV=2
Q8BYJ6	TBC1 domain family member 4 OS=Mus musculus OX=10090 GN=Tbc1d4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640 all species →	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan
PF11830 all species →	DUF3350	Domain of unknown function (DUF3350)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006020 all species →	Domain	PTB/PI domain	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR021785 all species →	Domain	Domain of unknown function DUF3350	Interproscan
IPR050302 all species →	Family	Rab GTPase-activating TBC domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47219 all species →	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g10507.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17902	TBC1D4, AS160; TBC1 domain family member 4	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.