Gene detail

Detailed information of g1054.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_001638191.3, protein FAM227B [Nematostella vectensis]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96M60	Protein FAM227B OS=Homo sapiens OX=9606 GN=FAM227B PE=1 SV=2
Q4R7D5	Protein FAM227B OS=Macaca fascicularis OX=9541 GN=FAM227B PE=2 SV=1
Q05AW7	Cytoplasmic tRNA 2-thiolation protein 1 OS=Xenopus laevis OX=8355 GN=ctu1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000010 (this species only)
Orthogroup (gene family)	OG0000013 (this species only)
Orthogroup (gene family)	OG0000454 (this species only)
Orthogroup (gene family)	OG0000793 (this species only)
Orthogroup (gene family)	OG0000906 (this species only)
Orthogroup (gene family)	OG0001049 (this species only)
Orthogroup (gene family)	OG0001290 (this species only)
Orthogroup (gene family)	OG0001783 (this species only)
Orthogroup (gene family)	OG0003908 (this species only)
Orthogroup (gene family)	OG0004606 (this species only)
Orthogroup (gene family)	OG0014201 (this species only)
Orthogroup (gene family)	OG0017734 (this species only)
Orthogroup (gene family)	OG0039368 (this species only)
Orthogroup (gene family)	OG0080347 (this species only)
Transcription factor family	Homeobox · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917 all species →	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF16503 all species →	zn-ribbon_14	Zinc-ribbon	Family	Interproscan
PF04991 all species →	LicD	LicD family	Domain	Interproscan
PF06602 all species →	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan
PF03351 all species →	DOMON	DOMON domain	Domain	Interproscan
PF10350 all species →	DUF2428	THADA/TRM732, DUF2428	Domain	Interproscan
PF14922 all species →	FWWh	Protein of unknown function	Family	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR041373 all species →	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR050373 all species →	Family	Fibrinogen C-terminal domain-containing protein	Interproscan
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR032442 all species →	Domain	Cytoplasmic tRNA 2-thiolation protein 1, C-terminal	Interproscan
IPR007074 all species →	Family	LicD family	Interproscan
IPR052942 all species →	Family	Lipopolysaccharide cholinephosphotransferase	Interproscan
IPR010569 all species →	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR030564 all species →	Family	Myotubularin family	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR045266 all species →	Domain	Copper-dependent monooxygenases, DOMON domain	Interproscan
IPR005018 all species →	Domain	DOMON domain	Interproscan
IPR051954 all species →	Family	tRNA (32-2'-O)-methyltransferase regulator THADA	Interproscan
IPR019442 all species →	Domain	THADA/TRM732, DUF2428	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR029417 all species →	Family	FAM227 Protein	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR047169 all species →	Family	Insulin gene enhancer protein ISL-1/2-like	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR051275 all species →	Family	Cellular adhesion and signaling domain-containing protein	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan
PTHR19143 all species →	FIBRINOGEN/TENASCIN/ANGIOPOEITIN	Interproscan
PTHR11807 all species →	ATPASES OF THE PP SUPERFAMILY-RELATED	Interproscan
PTHR43404 all species →	LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD	Interproscan
PTHR10807 all species →	MYOTUBULARIN-RELATED	Interproscan
PTHR33327 all species →	ENDONUCLEASE	Interproscan
PTHR14387 all species →	THADA/DEATH RECEPTOR INTERACTING PROTEIN	Interproscan
PTHR33560 all species →	PROTEIN FAM227B	Interproscan
PTHR24204 all species →	INSULIN GENE ENHANCER PROTEIN	Interproscan
PTHR11640 all species →	NEPHRIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0062023 all species →	Cellular Component	collagen-containing extracellular matrix	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0002143 all species →	Biological Process	tRNA wobble position uridine thiolation	Interproscan
GO:0002144 all species →	Cellular Component	cytosolic tRNA wobble base thiouridylase complex	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0004438 all species →	Molecular Function	phosphatidylinositol-3-phosphate phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0052629 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0007409 all species →	Biological Process	axonogenesis	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0048665 all species →	Biological Process	neuron fate specification	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan
GO:0050839 all species →	Molecular Function	cell adhesion molecule binding	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09370	ISL1; insulin gene enhancer protein ISL-1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.