Detailed information of g1055.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: VZI52260.1, unnamed protein product [Spirometra erinaceieuropaei]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P98160Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4
Q7ZW34Contactin-5 OS=Danio rerio OX=7955 GN=cntn5 PE=2 SV=1
P97528Contactin-6 OS=Rattus norvegicus OX=10116 GN=Cntn6 PE=1 SV=1
Gene familySubfamily
Transcription Factors FamilyTHAP

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07690MFS_1Major Facilitator SuperfamilyFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan
PF03351DOMONDOMON domainDomainInterproscan
PF13927Ig_3Immunoglobulin domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan
PF00019TGF_betaTransforming growth factor beta like domainDomainInterproscan
PF12017Tnp_P_elementTransposable element P transposase-like, HTH domainDomainInterproscan
PF21789TNP-like_RNaseH_CTNP-like, RNase H C-terminal domainDomainInterproscan
PF21787TNP-like_RNaseH_NTNP-like, RNase H N-terminal domainDomainInterproscan
PF05485THAPTHAP domainDomainInterproscan
PF21788TNP-like_GBDTNP-like, GTP-binding insertion domainDomainInterproscan
PF00567TUDORTudor domainDomainInterproscan
PF00147Fibrinogen_CFibrinogen beta and gamma chains, C-terminal globular domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036259Homologous_superfamilyMFS transporter superfamilyInterproscan
IPR011701FamilyMajor facilitator superfamilyInterproscan
IPR020846DomainMajor facilitator superfamily domainInterproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR021384FamilyMediator complex, subunit Med21Interproscan
IPR037212Homologous_superfamilyMediator complex, subunit Med7/Med21-likeInterproscan
IPR000945FamilyDopamine beta-hydroxylase-likeInterproscan
IPR005018DomainDOMON domainInterproscan
IPR045266DomainCopper-dependent monooxygenases, DOMON domainInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR014716Homologous_superfamilyFibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1Interproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR051170FamilyNeural and epithelial cell adhesion domain-containing proteinInterproscan
IPR036056Homologous_superfamilyFibrinogen-like, C-terminalInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan
IPR029034Homologous_superfamilyCystine-knot cytokineInterproscan
IPR015615FamilyTransforming growth factor-beta-relatedInterproscan
IPR017948Conserved_siteTransforming growth factor beta, conserved siteInterproscan
IPR001839DomainTransforming growth factor-beta, C-terminalInterproscan
IPR006612DomainTHAP-type zinc fingerInterproscan
IPR021896DomainTHAP9-like, helix-turn-helix domainInterproscan
IPR048367DomainTransposable element P transposase-like, RNase H, C-terminal domainInterproscan
IPR048365DomainTransposable element P transposase-like, RNase H domain, N-terminalInterproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR048366DomainTransposable element P transposase-like, GTP-binding insertion domainInterproscan
IPR050621FamilyTudor domain-containingInterproscan
IPR035437Homologous_superfamilySNase-like, OB-fold superfamilyInterproscan
IPR002999DomainTudor domainInterproscan
IPR002181DomainFibrinogen, alpha/beta/gamma chain, C-terminal globular domainInterproscan
IPR050373FamilyFibrinogen C-terminal domain-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23511SYNAPTIC VESICLE GLYCOPROTEIN 2Interproscan
PTHR37984PROTEIN CBG26694Interproscan
PTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7Interproscan
PTHR10157DOPAMINE BETA HYDROXYLASE RELATEDInterproscan
PTHR12231CTX-RELATED TYPE I TRANSMEMBRANE PROTEINInterproscan
PTHR11848TGF-BETA FAMILYInterproscan
PTHR47577THAP DOMAIN-CONTAINING PROTEIN 6Interproscan
PTHR22948TUDOR DOMAIN CONTAINING PROTEINInterproscan
PTHR19143FIBRINOGEN/TENASCIN/ANGIOPOEITINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0016021Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0003712Molecular Functiontranscription coregulator activityInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016592Cellular Componentmediator complexInterproscan
GO:0004500Molecular Functiondopamine beta-monooxygenase activityInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0006589Biological Processoctopamine biosynthetic processInterproscan
GO:0030667Cellular Componentsecretory granule membraneInterproscan
GO:0042420Biological Processdopamine catabolic processInterproscan
GO:0042421Biological Processnorepinephrine biosynthetic processInterproscan
GO:0043005Cellular Componentneuron projectionInterproscan
GO:0005125Molecular Functioncytokine activityInterproscan
GO:0005576Cellular Componentextracellular regionInterproscan
GO:0008083Molecular Functiongrowth factor activityInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K07620GJB1, CX32; gap junction beta-1 protein-Transportersko02000deepkoala

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