Gene detail

Detailed information of g10583.t1 in Montipora capitata

Genomic Location: Sc0000299:287555...296233
NR annotation: XP_029184379.2, serine/threonine-protein kinase ULK4-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10583.t1

atggagaactacattctctacgatgaaatcggtcgaggtgagcattctgttgtctacaaaggccgcaagaaagggacaatcgagttcgtggcgattcactgtgttgaaaaatgcaaacgttttgaacttcgaaatatagtaagacttacgcatgaaatcgagcatccgaatgttgttaagtttcatgagtggtacgaaactgcaaatcacatttgggtggtagttgagttgtgcaccggaaacagtttagatgttgtattgtcccaggacaaacgacttccagaggacacgattcgttgttttggagctgaaattgccaaagccctttttcatatacactctcttgaaatactctattgtgacttgagaccatcaaggataatgctggatggatcaggtgttttgaagttaagcgattttgctctggctagggttgaaggcgaggaagacttttatgattctgtggaagaggagaagaactcagaagaagaggagaagagttatagagaaggtcaaagagagacacctaaaaggccaaaaccgtcaccccattatatggccccagaaatactcaaaggggaacctcattcaaaagcagccgatctgtggtcatttggttgtgtgttacatgaactgtttatgggaaagcaaccatttcttgccgactcttttcctgaacttgtgacgaaaatatttcatgaaagcccgccacatgttaatgataaagaagtggatgcggcaaatgaggcattgctagatcttgatgatctaatacaaagccttctgcaaaaagaccctagccagcgcttgacttgggatgatttaataagtcatagattttggaatggttacttagaatgctgtttagaaactggaagaaaggttgacaatgtggtgtctgatgatgccctggaatcacagcaagaggaatcaagtgagattagtgcaaatgaaaatagagaatttcttggtggtgatgccaataaaaatgatgaaggggtcactacaagtgctgatttgttaaatgcacctgaactgatggtcagacaaggcacatacactttcagcaataagcagagtgaaaaaggttctgacaatgaatcgttaggaaaaaccaaaaccctggcaagagcgagaaattcaaataatcaggatgaaaacactccaaggtcaagcagccaaggggagcaaacggatgtaaatatcagtgtttgtgcttccagagaaaaggaaatcaaatccactccattaaaaaagaatcagacatttagtaaaaatgattttagtagtgaggttagacaaaatggacccggtcaaagtgaagatcaagagtccaaagcaacagatgaggaacagttgcattgtacgggtaacatactaggacaacagagcatttcggacttagccagccacccatctgacttcacagtaacgcctatcgcagacaaccctaaaataaaaaagttttcatttccaaagtgggatgccaagtccttgccttgtcagcctttaaaaccaggagaacttgaaaatctcccagaggaaaaatttgaggaacacgtgattgccattagagacttgctgtctcaaaatggcaagtcatcagctggacctatggctactcttcaccgcagtaaactgcacacctcatcttacctagcttcactctgccgagatagagaaattgcaaatttactctttgattctgatttcctttctgtggttcttaaacagattaaatcaggcttttctgcagattttaaaggaagattaggttatggcttgagccttctggctgctaatgccacaatgatttcagaggacttcaacatgacagaagtgttcatcacactgacagaagtgatcagagacaattttagaaatgccaaactaaagcagcatctgttgccagccttgggagaatttcttttttatgcagctactcaagaggaaaatttaggaagccaaattacacaatgggatgtaccaggcgttacatacaccatcatcaccagatgtcttcatgaaggagaggatattgtagtccagcactttgctgccaaaactattgagaatgtagcaacaaccactggcagacattgcattaagtttgcaacaaatgacacagctcagctactatggaatttcttcacccattgcacagttgatgcccagaaagtcactgctattacggctctcagccgtctgacaagtcactctccctcagtctttcaacacgtccttgaaaaagcgggattcaaggcagtaagctctgccctctcaaacagtgtgtcaaaagttcagcaaagtttggtgaccatgtttgtgatgcttctatccacacgacctcaaatgcgaaggcttgtgcaagaacgagacttaatcaccagaggtcttcatttgttggaaagtccttctgtggtgatccgtggaaaagtttttctcttagtagttaccttggtgcagtcgagcccagaagctctgctccactgctgtcagtccaggcttgttatgcacattgagcgacagatgaagagaggaacgccgctcaaaggggagagtccagacaaccgtgattatttgacgcagtgtcagcgactttgtgtcgctgctgttgtggatgcagctccaggtattcttacagatgtgttgacctctttggatgcggtacaaggacggaagcacccttcagcgggacaagccaagcagctcagaatacacctcccttttctctccatcattcttcatctggtcactagtcacgccttccgagctcagataacacacgaagagttcctcatcaacattggaatgctgctgtcgcatattatctctatcgagtctggcaccaccagcatcggatctgcagcaggtccaaatgccgcggaagatctcactagcgtcgtgttatccatcactgaagcagtcacgcaacaccctccaattctcctggagtatcacgcggttgtcacggagcacgtcttaccgcacttggcagcgctgattagcagttcaaatggagacaagagagtgttaagttttaggatgtttgctgacgttgcatcactgtactttgataaccacaactttaacagctcttccagcaaacttgaagatgtgttatcaagtacaagcaaactgaatgaggtaatcaatgatcatttacttccgcaatatcatcttatccttcaagaccaagatcctttacccgcatatggccttaagctgctactgtcctttctggagcgaagccctgaaatcattcacactgtagtcaaacaggagcttcttgtcactatgtcccagatcctacaatcccacactggccggcttgacaggggcatggtgcagagtatagtgggtctgctggactgtttggtttgcgcaaaagatgtcgacatgtccgagttatttaatcaaggtttgattgacagccttgtgtctctttttgttgatactgcagacaatcaaaacgatgatggcatccctggaaatgaagctttcgttgccttgttgcttcctctacttgatttgttgaacaatacattgaaatacgtttctagagaagttcgcaaagctcttcaggcgaaaactgagtccaattccgaaagtacggttcaaacgcaactggcagagaagcttctggttgagagcaaaccgctggtggatatgacaggcgtgctcatcaattttctctgccacgaagagactgatgttggggatagtgcttgcaagtgtttgtatctaatggttgaactttttggaggaatttacaaggacgctttaagtgcagaaaacatggagttctttgctgaggcgttaagcaccgctgacattaagaaacggaagcagcttctgagaatcatcaaaaggttgctgtcagcaaattctcaagtgagtgatgttgcaagagacgcgcagattctcgttgaagttttgcaagaaattggaaaaccacagcaatctgacgccgaagcgcttgctgttcaaagtctagtgcaagaaattctcgtgaaacttgacgttgccaaataa

Transcript

g10583.t1

ATGGAGAACTACATTCTCTACGATGAAATCGGTCGAGGTGAGCATTCTGTTGTCTACAAAGGCCGCAAGAAAGGGACAATCGAGTTCGTGGCGATTCACTGTGTTGAAAAATGCAAACGTTTTGAACTTCGAAATATAGTAAGACTTACGCATGAAATCGAGCATCCGAATGTTGTTAAGTTTCATGAGTGGTACGAAACTGCAAATCACATTTGGGTGGTAGTTGAGTTGTGCACCGGAAACAGTTTAGATGTTGTATTGTCCCAGGACAAACGACTTCCAGAGGACACGATTCGTTGTTTTGGAGCTGAAATTGCCAAAGCCCTTTTTCATATACACTCTCTTGAAATACTCTATTGTGACTTGAGACCATCAAGGATAATGCTGGATGGATCAGGTGTTTTGAAGTTAAGCGATTTTGCTCTGGCTAGGGTTGAAGGCGAGGAAGACTTTTATGATTCTGTGGAAGAGGAGAAGAACTCAGAAGAAGAGGAGAAGAGTTATAGAGAAGGTCAAAGAGAGACACCTAAAAGGCCAAAACCGTCACCCCATTATATGGCCCCAGAAATACTCAAAGGGGAACCTCATTCAAAAGCAGCCGATCTGTGGTCATTTGGTTGTGTGTTACATGAACTGTTTATGGGAAAGCAACCATTTCTTGCCGACTCTTTTCCTGAACTTGTGACGAAAATATTTCATGAAAGCCCGCCACATGTTAATGATAAAGAAGTGGATGCGGCAAATGAGGCATTGCTAGATCTTGATGATCTAATACAAAGCCTTCTGCAAAAAGACCCTAGCCAGCGCTTGACTTGGGATGATTTAATAAGTCATAGATTTTGGAATGGTTACTTAGAATGCTGTTTAGAAACTGGAAGAAAGGTTGACAATGTGGTGTCTGATGATGCCCTGGAATCACAGCAAGAGGAATCAAGTGAGATTAGTGCAaatgaaaatagagaatttctTGGTGGTGATGCCAATAAAAATGATGAAGGGGTCACTACAAGTGCTGATTTGTTAAATGCACCTGAACTGATGGTCAGACAAGGCACATACACTTTCAGCAATAAGCAGAGTGAAAAAGGTTCTGACAATGAATCGTTAGGAAAAACCAAAACCCTGGCAAGAGCGAGAAATTCAAATAATCAGGATGAAAACACTCCAAGGTCAAGCAGCCAAGGGGAGCAAACGGATGTAAATATCAGTGTTTGTGCTTCCAGAGAAAAGGAAATCAAATCCACTCCATTAAAAAAGAATCAGACATTTAGTAAAAATGATTTTAGTAGTGAGGTTAGACAAAATGGACCCGGTCAAAGTGAAGATCAAGAGTCCAAAGCAACAGATGAGGAACAGTTGCATTGTACGGGTAACATACTAGGACAACAGAGCATTTCGGACTTAGCCAGCCACCCATCTGACTTCACAGTAACGCCTATCGCAGACAACcctaaaataaaaaagttttcaTTTCCAAAGTGGGATGCCAAGTCCTTGCCTTGTCAGCCTTTAAAACCAGGAGAACTTGAAAATCTCCCAGAGGAAAAATTTGAGGAACACGTGATTGCCATTAGAGACTTGCTGTCTCAAAATGGCAAGTCATCAGCTGGACCTATGGCTACTCTTCACCGCAGTAAACTGCACACCTCATCTTACCTAGCTTCACTCTGCCGAGATAGAGAAATTGCAAATTTACTCTTTGATTCTGATTTCCTTTCTGTGGTTCTTAAACAGATTAAATCAGGCTTTTCTGCAGATTTTAAAGGAAGATTAGGTTATGGCTTGAGCCTTCTGGCTGCTAATGCCACAATGATTTCAGAGGACTTCAACATGACAGAAGTGTTCATCACACTGACAGAAGTGATCAGAGACAATTTTAGAAATGCCAAACTAAAGCAGCATCTGTTGCCAGCCTTGGGAGAATTTCTTTTTTATGCAGCTACTCAAGAGGAAAATTTAGGAAGCCAAATTACACAATGGGATGTACCAGGCGTTACATACACCATCATCACCAGATGTCTTCATGAAGGAGAGGATATTGTAGTCCAGCACTTTGCTGCCAAAACTATTGAGAATGTAGCAACAACCACTGGCAGACATTGCATTAAGTTTGCAACAAATGACACAGCTCAGCTACTATGGAATTTCTTCACCCATTGCACAGTTGATGCCCAGAAAGTCACTGCTATTACGGCTCTCAGCCGTCTGACAAGTCACTCTCCCTCAGTCTTTCAACACGTCCTTGAAAAAGCGGGATTCAAGGCAGTAAGCTCTGCCCTCTCAAACAGTGTGTCAAAAGTTCAGCAAAGTTTGGTGACCATGTTTGTGATGCTTCTATCCACACGACCTCAAATGCGAAGGCTTGTGCAAGAACGAGACTTAATCACCAGAGGTCTTCATTTGTTGGAAAGTCCTTCTGTGGTGATCCGTGGAAAAGTTTTTCTCTTAGTAGTTACCTTGGTGCAGTCGAGCCCAGAAGCTCTGCTCCACTGCTGTCAGTCCAGGCTTGTTATGCACATTGAGCGACAGATGAAGAGAGGAACGCCGCTCAAAGGGGAGAGTCCAGACAACCGTGATTATTTGACGCAGTGTCAGCGACTTTGTGTCGCTGCTGTTGTGGATGCAGCTCCAGGTATTCTTACAGATGTGTTGACCTCTTTGGATGCGGTACAAGGACGGAAGCACCCTTCAGCGGGACAAGCCAAGCAGCTCAGAATACACCTCCCTTTTCTCTCCATCATTCTTCATCTGGTCACTAGTCACGCCTTCCGAGCTCAGATAACACACGAAGAGTTCCTCATCAACATTGGAATGCTGCTGTCGCATATTATCTCTATCGAGTCTGGCACCACCAGCATCGGATCTGCAGCAGGTCCAAATGCCGCGGAAGATCTCACTAGCGTCGTGTTATCCATCACTGAAGCAGTCACGCAACACCCTCCAATTCTCCTGGAGTATCACGCGGTTGTCACGGAGCACGTCTTACCGCACTTGGCAGCGCTGATTAGCAGTTCAAATGGAGACAAGAGAGTGTTAAGTTTTAGGATGTTTGCTGACGTTGCATCACTGTACTTTGATAACCACAACTTTAACAGCTCTTCCAGCAAACTTGAAGATGTGTTATCAAGTACAAGCAAACTGAATGAGGTAATCAATGATCATTTACTTCCGCAATATCATCTTATCCTTCAAGACCAAGATCCTTTACCCGCATATGGCCTTAAGCTGCTACTGTCCTTTCTGGAGCGAAGCCCTGAAATCATTCACACTGTAGTCAAACAGGAGCTTCTTGTCACTATGTCCCAGATCCTACAATCCCACACTGGCCGGCTTGACAGGGGCATGGTGCAGAGTATAGTGGGTCTGCTGGACTGTTTGGTTTGCGCAAAAGATGTCGACATGTCCGAGTTATTTAATCAAGGTTTGATTGACAGCCTTGTGTCTCTTTTTGTTGATACTGCAGACAATCAAAACGATGATGGCATCCCTGGAAATGAAGCTTTCGTTGCCTTGTTGCTTCCTCTACTTGATTTGTTGAACAATACATTGAAATACGTTTCTAGAGAAGTTCGCAAAGCTCTTCAGGCGAAAACTGAGTCCAATTCCGAAAGTACGGTTCAAACGCAACTGGCAGAGAAGCTTCTGGTTGAGAGCAAACCGCTGGTGGATATGACAGGCGTGCTCATCAATTTTCTCTGCCACGAAGAGACTGATGTTGGGGATAGTGCTTGCAAGTGTTTGTATCTAATGGTTGAACTTTTTGGAGGAATTTACAAGGACGCTTTAAGTGCAGAAAACATGGAGTTCTTTGCTGAGGCGTTAAGCACCGCTGACATTAAGAAACGGAAGCAGCTTCTGAGAATCATCAAAAGGTTGCTGTCAGCAAATTCTCAAGTGAGTGATGTTGCAAGAGACGCGCAGATTCTCGTTGAAGTTTTGCAAGAAATTGGAAAACCACAGCAATCTGACGCCGAAGCGCTTGCTGTTCAAAGTCTAGTGCAAGAAATTCTCGTGAAACTTGACGTTGCCAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R4M2	Serine/threonine-protein kinase ULK4 OS=Pongo abelii OX=9601 GN=ULK4 PE=2 SV=1
Q96C45	Serine/threonine-protein kinase ULK4 OS=Homo sapiens OX=9606 GN=ULK4 PE=1 SV=2
Q3V129	Serine/threonine-protein kinase ULK4 OS=Mus musculus OX=10090 GN=Ulk4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006576 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR045906 all species →	Family	Serine/threonine-protein kinase ULK4	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46240 all species →	SER/THR PROTEIN KINASE ULK4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17545	ULK4; serine/threonine-protein kinase ULK4	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g10583.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

23.0Max TPM

8.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	9.00	23.04
whole organisms · low pH treatment	15	15	7.89	20.75
whole organisms · extra low pH treatment pH treatment	12	12	7.94	17.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	23.04
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	16.94
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	16.69
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	16.51
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	16.01
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	12.11
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	11.64
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	11.59
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	11.11
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	8.96
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	8.15
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	8.02
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	7.71
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	4.78
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	4.77
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.46
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	2.45
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	2.30
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.18
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	0.85
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	0.79
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	20.75
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	18.00
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	17.15
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	11.04
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	11.02
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	9.45
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	6.69
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	6.31
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	5.39
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.71
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	2.65
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.50
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	2.40
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	1.24
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	1.08
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	17.43
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	16.53
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	11.59
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	10.53
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	8.23
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	7.80
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	7.60
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.88
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	3.40
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.50
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	2.42
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	2.37

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.