Gene detail

Detailed information of g10617.t1 in Tripedalia maipoensis

Genomic Location: scaffold_7:27328349...27334494
NR annotation: no NCBI-NR hit recorded
Species Tripedalia maipoensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10617.t1

ATGGCTTCGTTGAAATCTGTATTAAAGTGCTGGAAAGACTTCGATCTTCCCACACTGCATAAGGAGCTCGATGACACTGCAAACGCGATTGGCGCGAGACAAGATGAAGCTGAGGCAAACCGAAAGAAGTTAATTGCACTTACGAAAGACTTGAAGAAGGATTGGGATGAAGAGCTGAAGAAAAGGATCGGTCCTTTGATAAGGGCGTTCCAAGCAGAGGTGGACTTGCTGACGAAACGAAGTAAAGCAGCAGAGGCTTCCTTCCTAACCTTGTACAAGAAAGTGCTAGAGGTGCCAGATCCTTCCCCTTACCTGGAACAAACCTTAAAATACCAAAACCAGTTGACCAAGGCTAAAGACTTGGAGTTTGAAAATCAAAAACTGAAGGAGACCCTTGCTGACTACAATGAAGAATTTGCTGAGGTCAAAAACCAAGAGGTGACCATCAATAAGTTGAGACAAGAAATAAAGTATATGGAGGATGTAATTGAAGAGAAAATTGTAGAACGCTTGTTAGTCCAAGGAAAGGAACTACAAGCAAAGTTTGACCAACGAGAGCAAGTACTTCAAAAGCAACAATTCGAGGCTGGTGCAAAACTAGGAGAGGCTGAGGAAAAAGTTCGGACCCTGCAGGCGGCTCTTGAGGTGGCTAACTCTGAGCTGTTTGCCTCCAGGGCTAAGAGTGAGGAGGATATGGCAGCAAAGATAGCGGAGATAGAAATGATTGAAATTGACTTAGAATCAGCTCAGCAGCGTGCGTTAGCAGCTGAAAAGTTTGCAGAGTCACTTCAGGATGAATTAAAGCGTGCTCTGAACGCCCGAGCAGACACAGAGCAACTCGATGTAGCAAGCAGTGAAGTTCAGCACATCACAGTGCAGCAGCTCGAAAGTCAGTTAGCTGACAGAGAATTGGAATTGAACAAAATGATGGAAGAAATCCATTTTCTTCAAGGCTCATTGGCGAGGGTACGGGAACAGACCAGGCATGAAGTATCAGTCATTGAACGACAACTCGAGGATGCCATGCGTGCTGTGGATGAGTATCAGCACAAACTGGCTGAGCAAGCAGACTACGAGGACATTAAGCGCGAGCTTGCAGTACTGAAGACGGTTGAACTCGGGGAAAGCAGCTGCATTAATGGTAGTGAAACAATCAAATCACTAGAGCAGCTTTTGTTGGCAAAGAATAAGCAACTGCAAACGGAAAGTGCTGGATTGCACGTGACTAATCACGAGTTGCAAGTAAGATGTTCCGAGTTGGAGAAGAAGACCGTAGAGGATACAAGAAAAATCAAGGAACAGGCAGACCTTATATCTCAACTCGAACAAGATATCCTTAATGTTCACTCCTTGACAAGCGGTTTAAGGGGGGAGGGGGAGGGGGAGCCCAACCCATCTGAACTGGACATTGTCAATAAGGCTGTCTTAGAAGTGAATCAGGCAAGTTCGTCGGCGAAGGAGCAAGAGTCTGAGTCCATGTTCTCCATTGTTGCGAGCCAGAGAGAAAGGTTTCGGAATCGGACTCTGGAGCTCGAGGCGCAAGGTCGCCATAATCAGCAACAGATGCTACTGCTCAGAAACGAAGTTGATAGTCTCCGTTCGGACAACATCAAACTGTATGAGAAAATCAAGTTTTTGCAAAGCTACCCTGCACAGTCATCTAACTTAGAGGACGACTCGGTAAAAAAGTACAGTGCACAATACGAACAGAGAATCGATCCATTTGCGGCCTTTTCTAAGCGAGAGCGGCAGCAACGCTATCAGAACCTCAGCGCAGCAGAGAAAGTGACCCTGAACTTGGGACGCTTTGTACTTTCCAACAAAGTTGCACGAACAATTGTTTTCTTTTACACTATTTTCCTTCATGCGCTAGTTTTCCTGGTGTTGTACAAATTGGCCACCACTGAGGTTTGTAATAGGGATGTTGCCGCGGACTGCGCCAAGAGCTTTGCAGAGCATATGTATCAGTTTCATGGGAATCCCGTAAAAGAAGGTGCCTTGGGAAATAGAGGAAAGACTTAG

Transcript

g10617.t1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08172 all species →	CASP_C	CASP C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012955 all species →	Domain	CASP, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14043 all species →	CCAAT DISPLACEMENT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09313	CUTL; homeobox protein cut-like	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.