Gene detail

Detailed information of g10730.t1 in Montipora capitata

Genomic Location: Sc0000307:106442...119795
NR annotation: XP_044178490.1, protein dispatched homolog 3 [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10730.t1

atgatagaaatgttaatctcacttgaaaaggaagatgacattgagcagtttttggctggaacatacagtaacaccaggcaaaatgagttgtcatcttccctggaagggtttgaacttttagcaagaacacctcttcaaaataatgatgatgatgatgatgatgatgatgatgatgcattacttatactcaatgacagctctcagtcaccctctcttagttctagtgatgctgatcttgcaatgtatgataaccctagtggaacatttgaccatcaaacagtacctcttgtgcaacatgcattctcagaaccaagaccaatacctgttgccatttctagatcttgtggaagtgggctgcaagaagttttgtatcactggttggctcttccaataaagaaatgcccttatgttgtccttgttgggtttctgatcatcctaggagtatccataggtcttgacactctgattcaggcatcgtctaccccaccttcattcttcaaggaagactccaatttacagcagatgtggaacctgagatataatatgagcagtgacagcctcaatgtgaatgatttaaaaagcgagttaatagttgaacatttctcaaatgaaattgacactccaacttcaactagtaaaccaacaaggagaaaaccctctaaggcaaacggcattaggagtacagctccttctcctgttactgcagcacaacctggccatgatccaaaaacaaacatgtggcacattccttcatcttcaactgaatcctcaacttcttcatccaaaccaacttttgtgtcacagacaacatcgacccctcagccaagctccaagaagatatcaacacttaaagctccaacaaagcgcacgaagaagccaattgcttcagaaaatccaccaccagcaacagagagacccaagtcagataactctgggaatgttggcacaatgataccccatgagagagagacattgcctcctcgttgtcctggtaactgtgaccccattgctaaacccatcgtggattcatcagccacagtttatgttatacttggtttgaaggccattgatcgcagcaagattataagagagagtgtttttacagagaagggtgacgttattccagattacgcattttctgagttggtgaagaaggaacatctcaatttcctcaagtatgcatgcaaactgtgtaaaagactgagcaataattctgaactggttcgacctggaggtgcagactgtttcccttcctggattatagattctttcccgaaaggcttacgccatgatccttggggcaaacattgcgcagacatcaaagtacctgaattcagctcaggcaaatcgcgtgccatgctgctgcggatgtctgcacctaatggagattataccaatggtacttattggatgaagatggcatttgaatcgactgtcttctcagggaagtcatcttgggagagagtggaagattttgacaaatggaacaagttcttaaaggaagaacttcgaacgtatcccaaaggatttcattctgcattccagaccagttcggaatgggtgaacaccttcacagaggtcatagctatcaacagtgccatctatggaattgtcttttcgattgttctgtgtctgggatctgtggcgatcttcacagcaaatggccttcttactttgattgtttctatcacaattttaggtgttctgacctcggtggtagcaatattctatgctgcgtcatggcaacttggtgctgtggaggccatttctctttccatcttagttgggacatctgtggattactgtgtccatcttgtagaaggatacatcctggcaggaaatgctatacccccagatctcaccacatcaaaggaaattcgaggctggagaactgtagctgccatgtcccacgtaggaacagcaattgttagctcagccattacaacagttgtggcatccatacctctgtgtgtgacaaccattcagctttttgctaagtttgggcaaatcctggccattaacacagccgtgtcaattttcttcactttgtcaatctgtgtggctttgctatgcttaattgctccagcaaggttcaaagcctctggttggacaaccttaaaatctttagttattgtgttaactgtgtatggagtaggagccctcattttgtttcttataaattggaaggctgttagaatacctgggccttcaggggagcctttgtttccaatacctgaatag

Transcript

g10730.t1

ATGATAGAAATGTTAATCTCACTTGAAAAGGAAGATGACATTGAGCAGTTTTTGGCTGGAACATACAGTAACACCAGGCAAAATGAGTTGTCATCTTCCCTGGAAGGGTTTGAACTTTTAGCAAGAACACCTCTtcaaaataatgatgatgatgatgatgatgatgatgatgatgcattACTTATACTCAATGACAGCTCTCAGTCACCCTCTCTTAGTTCTAGTGATGCTGATCTTGCAATGTATGATAACCCTAGTGGAACATTTGACCATCAAACAGTACCTCTTGTGCAACATGCATTCTCAGAACCAAGACCAATACCTGTTGCCATTTCTAGATCTTGTGGAAGTGGGCTGCAAGAAGTTTTGTATCACTGGTTGGCTCTTCCAATAAAGAAATGCCCTTATGTTGTCCTTGTTGGGTTTCTGATCATCCTAGGAGTATCCATAGGTCTTGACACTCTGATTCAGGCATCGTCTACCCCACCTTCATTCTTCAAGGAAGACTCCAATTTACAGCAGATGTGGAACCTGAGATATAATATGAGCAGTGACAGCCTCAATGTGAATGATTTAAAAAGCGAGTTAATAGTTGAACATTTCTCAAATGAAATTGACACTCCAACTTCAACTAGTAAACCAACAAGGAGAAAACCCTCTAAGGCAAACGGCATTAGGAGTACAGCTCCTTCTCCTGTTACTGCAGCACAACCTGGCCATGATCCAAAAACAAACATGTGGCACATTCCTTCATCTTCAACTGAATCCTCAACTTCTTCATCCAAACCAACTTTTGTGTCACAGACAACATCGACCCCTCAGCCAAGCTCCAAGAAGATATCAACACTTAAAGCTCCAACAAAGCGCACGAAGAAGCCAATTGCTTCAGAAAATCCACCACCAGCAACAGAGAGACCCAAGTCAGATAACTCTGGGAATGTTGGCACAATGATACCCCATGAGAGAGAGACATTGCCTCCTCGTTGTCCTGGTAACTGTGACCCCATTGCTAAACCCATCGTGGATTCATCAGCCACAGTTTATGTTATACTTGGTTTGAAGGCCATTGATCGCAGCAAGATTATAAGAGAGAGTGTTTTTACAGAGAAGGGTGACGTTATTCCAGATTACGCATTTTCTGAGTTGGTGAAGAAGGAACATCTCAATTTCCTCAAGTATGCATGCAAACTGTGTAAAAGACTGAGCAATAATTCTGAACTGGTTCGACCTGGAGGTGCAGACTGTTTCCCTTCCTGGATTATAGATTCTTTCCCGAAAGGCTTACGCCATGATCCTTGGGGCAAACATTGCGCAGACATCAAAGTACCTGAATTCAGCTCAGGCAAATCGCGTGCCATGCTGCTGCGGATGTCTGCACCTAATGGAGATTATACCAATGGTACTTATTGGATGAAGATGGCATTTGAATCGACTGTCTTCTCAGGGAAGTCATCTTGGGAGAGAGTGGAAGATTTTGACAAATGGAACAAGTTCTTAAAGGAAGAACTTCGAACGTATCCCAAAGGATTTCATTCTGCATTCCAGACCAGTTCGGAATGGGTGAACACCTTCACAGAGGTCATAGCTATCAACAGTGCCATCTATGGAATTGTCTTTTCGATTGTTCTGTGTCTGGGATCTGTGGCGATCTTCACAGCAAATGGCCTTCTTACTTTGATTGTTTCTATCACAATTTTAGGTGTTCTGACCTCGGTGGTAGCAATATTCTATGCTGCGTCATGGCAACTTGGTGCTGTGGAGGCCATTTCTCTTTCCATCTTAGTTGGGACATCTGTGGATTACTGTGTCCATCTTGTAGAAGGATACATCCTGGCAGGAAATGCTATACCCCCAGATCTCACCACATCAAAGGAAATTCGAGGCTGGAGAACTGTAGCTGCCATGTCCCACGTAGGAACAGCAATTGTTAGCTCAGCCATTACAACAGTTGTGGCATCCATACCTCTGTGTGTGACAACCATTCAGCTTTTTGCTAAGTTTGGGCAAATCCTGGCCATTAACACAGCCGTGTCAATTTTCTTCACTTTGTCAATCTGTGTGGCTTTGCTATGCTTAATTGCTCCAGCAAGGTTCAAAGCCTCTGGTTGGACAACCTTAAAATCTTTAGTTATTGTGTTAACTGTGTATGGAGTAGGAGCCCTCATTTTGTTTCTTATAAATTGGAAGGCTGTTAGAATACCTGGGCCTTCAGGGGAGCCTTTGTTTCCAATACCTGAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A3KFU9	Protein dispatched homolog 3 OS=Mus musculus OX=10090 GN=Disp3 PE=2 SV=1
B9U3F2	Protein dispatched homolog 3 OS=Gallus gallus OX=9031 GN=DISP3 PE=1 SV=1
Q9P2K9	Protein dispatched homolog 3 OS=Homo sapiens OX=9606 GN=DISP3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007833 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for g10730.t1 in Montipora capitata.

InterPro

InterPro term	Type	Description	Source
IPR042480 all species →	Family	Protein dispatched homolog 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46687 all species →	PROTEIN DISPATCHED HOMOLOG 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24683	DISP3, PTCHD2; protein dispatched 3	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g10730.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

92.4Max TPM

33.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	35.06	88.21
whole organisms · low pH treatment	15	15	29.04	58.66
whole organisms · extra low pH treatment pH treatment	12	12	35.26	92.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	88.21
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	85.26
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	78.03
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	59.30
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	55.84
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	51.42
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	36.46
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	34.71
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	33.84
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	32.84
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	32.06
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	31.33
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	30.95
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	24.04
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	19.13
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	16.46
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	6.77
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	6.64
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.49
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.17
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	2.41
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	58.66
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	55.44
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	46.14
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	39.37
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	34.64
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	30.62
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	28.89
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	28.75
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	27.62
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	23.70
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	21.48
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	18.14
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	9.39
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.75
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	5.95
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	92.41
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	76.13
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	73.30
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	32.69
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	32.27
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	30.35
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	28.25
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	22.32
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	16.62
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	12.54
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.23
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	2.02

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.