Gene detail

Detailed information of g10734.t1 in Montipora capitata

Genomic Location: Sc0000307:176498...186095
NR annotation: XP_044178051.1, dnaJ homolog subfamily C member 16-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g10734.t1

atgaaaactactttgtttttaaggcatcttttgctgtttggcttgattctgattcaatttccatcgtgtctagaatcgttggatgctgatgaagacccttacaagatactgggtgttcctcgatctgcaagcaacggcgacataaaaaaggcttataagaaaatggccagaaactggcaccctgataagaatgatgacccggaagcacaagaaatgtttattaaaataaatgaagctcatgagattttgtctgataaggaaaagaagcagcactttgatttgtacggcactacaacgcaaccaagaaatggtcaaaaacaaggaagtccattttttgatcctcatagtggctttagcttctttttcaatggaatgcctttccagaacagttggtcaagacctggacaaatcgactatagaacatactacaagaccattctaccaatgagcagtgaaaagccatatttgataaaatttattgcagactggtgtttcgcctgtgcacaaattgaagagatatgggaagatacaacaaatggcatgaaaaagaatggcatgggaatcggcatagtcaacataaacagtagtccacgtcttgctgacgctttgggcataaggcatgttccaagcatcattggtgttataaatggatacatttcattctacagtggatcggttaccaagcaaagattgaaagattttgtaactggattgttccctggtggactgattcaaatggtaacaaaacagaatttggattctttcctggatacaagtggaacaaacaaacctggtgtagttctcttctcacaaaaacttttgccttcactactctatcagcttgttgcttttagcagtcataagcaacagtcatttggctttgtttcattaaaagacagctctgcagaatccatcaggaagagattccatgcgaactctgaagaaacgacagttatgatctttaaagacgatgcagctgcaccagatgttgtagtcacagcatcagaactgaaaagtggaaaacttcgggaagtggtagaaagtcacaaatatttgtaccttccaaggctttcatcacgaagcttgtttcatgacctttgtcctgaggagagatttagatcacagcgaagactgtgtgttgtccttttcacaaagcaaggccaacacgagaaagaaaagcttatcctgagattattagcaaaagacaaaaaataccaaaatgagcaacgcattcaattcctttatctttatgaagatgtgcaaaaggaatttattattaatggttttaaagatggcacgaaggaggatacatgtgctgataattccactgcaccaaaggtagtaattatttggaacaaaggaaagaaagaaataagatatgattggctgcggacaggatggtgtgtgtcagatggagagctgtcactaacaaaagcgcgactggtggtcatgttaaatgacttgttatcaggagaggggaaactacgctacacttcaaggcttccattcatacataatgaacatgctccagggctgctctcattgttgttgacctggtgcaaagatgcattttactatgtaagatcctccatgtatcggaaagaggctatctccttagtttcattgctatttggattgggaattattttgttctttaatgcctttgtccccagtgcgagtgaatcgctggacagggttcataaaacatcaaaaaagagccactctccacccccacaaaacaacactgttctgggtgttgttcgtttggatccaagtaatgaacattctttggtgtcggaagctcccccaggtcacatgacatttgctctgcttgtagacgaagagaatgtacaggaagccgtaaattcacctctgatccaagctttttctgacgtagtgaacccatacaaaggcaacccgaacctcacgtttgcctggctgacaatttccgacaatcttgcgtggtgttctgaggtgatgagcgttgacaagtttggcgaagtgactccgggcatcgttcttgcattaaacggccacaagaagtatttatcaatcttcaaacccagcgacctcacaaaaagtgcatttttcaagcgccaaggaggtgatttgatgggatttgacaacagcgacagcgaaaccgaatcgatcagcgatccacagagagaatacgagctgaaacgtcagaaggtgttgagtgtatcactacggagacaatttgtagtttggttggagaagcttctcgatggattagtagataggacaaaaattgaagaatggccaaggtttacggactaa

Transcript

g10734.t1

ATGAAAACTACTTTGTTTTTAAGGCATCTTTTGCTGTTTGGCTTGATTCTGATTCAATTTCCATCGTGTCTAGAATCGTTGGATGCTGATGAAGACCCTTACAAGATACTGGGTGTTCCTCGATCTGCAAGCAACGGCGACATAAAAAAGGCTTATAAGAAAATGGCCAGAAACTGGCACCCTGATAAGAATGATGACCCGGAAGCACAAGAAATgtttattaaaataaatgaagcTCATGAGATTTTGTCTGATAAGGAAAAGAAGCAGCACTTTGATTTGTACGGCACTACAACGCAACCAAGAAATGGTCAAAAACAAGGAAGTCCATTTTTTGATCCTCATAGTGGCTTTAGCTTCTTTTTCAATGGAATGCCTTTCCAGAACAGTTGGTCAAGACCTGGACAAATCGACTATAGAACATACTACAAGACCATTCTACCAATGAGCAGTGAAAAGCCATATTTGATAAAATTTATTGCAGACTGGTGTTTCGCCTGTGCACAAATTGAAGAGATATGGGAAGATACAACAAATGGCATGAAAAAGAATGGCATGGGAATCGGCATAGTCAACATAAACAGTAGTCCACGTCTTGCTGACGCTTTGGGCATAAGGCATGTTCCAAGCATCATTGGTGTTATAAATGGATACATTTCATTCTACAGTGGATCGGTTACCAAGCAAAGATTGAAAGATTTTGTAACTGGATTGTTCCCTGGTGGACTGATTCAAATGGTAACAAAACAGAATTTGGATTCTTTCCTGGATACAAGTGGAACAAACAAACCTGGTGTAGTTCTCTTCTCACAAAAACTTTTGCCTTCACTACTCTATCAGCTTGTTGCTTTTAGCAGTCATAAGCAACAGTCATTTGgctttgtttcattaaaagaCAGCTCTGCAGAATCCATCAGGAAGAGATTCCATGCGAACTCTGAAGAAACGACAGTTATGATCTTTAAAGACGATGCAGCTGCACCAGATGTTGTAGTCACAGCATCAGAACTGAAAAGTGGAAAACTTCGGGAAGTGGTAGAAAGTCACAAATATTTGTACCTTCCAAGGCTTTCATCACGAAGCTTGTTTCATGACCTTTGTCCTGAGGAGAGATTTAGATCACAGCGAAGACTGTGTGTTGTCCTTTTCACAAAGCAAGGCCAACACGAGAAAGAAAAGCTTATCCTGAGATTATtagcaaaagacaaaaaataccAAAATGAGCAACGCATTCAATTCCTTTATCTTTATGAAGATGTGCAAAAGGAATTTATTATTAATGGTTTTAAAGATGGCACGAAGGAGGATACATGTGCTGATAATTCCACTGCACCAAAGGTAGTAATTATTTGgaacaaaggaaagaaagaaataagatATGATTGGCTGCGGACAGGATGGTGTGTGTCAGATGGAGAGCTGTCACTAACAAAAGCGCGACTGGTGGTCATGTTAAATGACTTGTTATCAGGAGAGGGGAAACTACGCTACACTTCAAGGCTTCCATTCATACATAATGAACATGCTCCAGGGCTGCTCTCATTGTTGTTGACCTGGTGCAAAGATGCATTTTACTATGTAAGATCCTCCATGTATCGGAAAGAGGCTATCTCCTTAGTTTCATTGCTATTTGGATTGGgaattattttgttctttaatgCCTTTGTCCCCAGTGCGAGTGAATCGCTGGACAGGGTTCATAAAACATCAAAAAAGAGCCACTCTCCACCCCCACAAAACAACACTGTTCTGGGTGTTGTTCGTTTGGATCCAAGTAATGAACATTCTTTGGTGTCGGAAGCTCCCCCAGGTCACATGACATTTGCTCTGCTTGTAGACGAAGAGAATGTACAGGAAGCCGTAAATTCACCTCTGATCCAAGCTTTTTCTGACGTAGTGAACCCATACAAAGGCAACCCGAACCTCACGTTTGCCTGGCTGACAATTTCCGACAATCTTGCGTGGTGTTCTGAGGTGATGAGCGTTGACAAGTTTGGCGAAGTGACTCCGGGCATCGTTCTTGCATTAAACGGCCACAAGAAGTATTTATCAATCTTCAAACCCAGCGACCTCACAAAAAGTGCATTTTTCAAGCGCCAAGGAGGTGATTTGATGGGATTTGACAACAGCGACAGCGAAACCGAATCGATCAGCGATCCACAGAGAGAATACGAGCTGAAACGTCAGAAGGTGTTGAGTGTATCACTACGGAGACAATTTGTAGTTTGGTTGGAGAAGCTTCTCGATGGATTAGTAGATAGGACAAAAATTGAAGAATGGCCAAGGTTTACGGACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2G8	DnaJ homolog subfamily C member 16 OS=Homo sapiens OX=9606 GN=DNAJC16 PE=1 SV=3
Q5RCM7	DnaJ homolog subfamily C member 16 OS=Pongo abelii OX=9601 GN=DNAJC16 PE=2 SV=1
Q5ZKZ4	DnaJ homolog subfamily C member 16 OS=Gallus gallus OX=9031 GN=DNAJC16 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006147 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR052448 all species →	Family	DnaJ Homolog Subfamily C Member 16	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44303 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 16	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g10734.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09536	DNAJC16; DnaJ homolog subfamily C member 16	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g10734.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

96.9Max TPM

46.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	45.23	81.04
whole organisms · low pH treatment	15	15	47.95	96.86
whole organisms · extra low pH treatment pH treatment	12	12	45.09	83.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	81.04
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	78.12
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	77.89
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	77.48
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	74.23
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	58.22
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	57.43
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	53.50
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	50.67
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	48.21
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	46.85
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	32.65
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	29.23
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	26.66
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	25.38
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	24.16
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	23.58
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	23.37
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	23.25
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	19.52
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	18.46
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	96.86
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	83.32
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	73.92
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	58.89
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	58.87
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	56.21
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	55.34
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	46.60
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	41.19
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	29.96
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	28.74
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	23.71
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	23.71
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	22.30
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	19.60
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	83.80
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	70.90
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	64.71
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	54.89
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	49.94
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	47.16
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	45.15
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	26.33
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	26.23
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	25.63
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	24.86
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	21.44

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.