Detailed information of g10781.t1 in Montipora capitata

Genomic Location: Sc0000309:34741...42287
NR annotation: XP_029204213.2, V-type proton ATPase subunit E-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P54611V-type proton ATPase subunit E OS=Drosophila melanogaster OX=7227 GN=Vha26 PE=1 SV=1
P31402V-type proton ATPase subunit E OS=Manduca sexta OX=7130 GN=VHA26 PE=2 SV=1
P36543V-type proton ATPase subunit E 1 OS=Homo sapiens OX=9606 GN=ATP6V1E1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007247 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01991
all species →		vATP-synt_EATP synthase (E/31 kDa) subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002842
all species →		FamilyV-type ATPase subunit EInterproscan
IPR038495
all species →		Homologous_superfamilyV-type ATPase subunit E, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45715
all species →		ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0033178
all species →		Cellular Componentproton-transporting two-sector ATPase complex, catalytic domainInterproscan
GO:0046961
all species →		Molecular Functionproton-transporting ATPase activity, rotational mechanismInterproscan
GO:1902600
all species →		Biological Processproton transmembrane transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02150ATPeV1E, ATP6E; V-type H+-transporting ATPase subunit E-Rheumatoid arthritisko05323deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g10781.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples
48TPM > 0
3Conditions
759.0Max TPM
413.5Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organisms · ambient pH treatment 21 21 390.01 661.62
whole organisms · low pH treatment 15 15 440.76 759.01
whole organisms · extra low pH treatment pH treatment 12 12 420.72 662.90

Per sample · hover a bar for the full sample record

Show the sample table (48 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR11452259 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 661.62
SRR11452250 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 543.03
SRR11452246 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 540.55
SRR11452252 whole organisms · ambient pH treatment whole organisms prawn chip ambient pH treatment SRP254626 540.06
SRR11452260 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 527.53
SRR11452254 whole organisms · ambient pH treatment whole organisms cleavage ambient pH treatment SRP254626 525.46
SRR11452243 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 505.28
SRR11452237 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 461.73
SRR11452263 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 416.45
SRR11452251 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 392.09
SRR11452242 whole organisms · ambient pH treatment whole organisms gastrula ambient pH treatment SRP254626 378.83
SRR11452217 whole organisms · ambient pH treatment whole organisms fertilized embryo ambient pH treatment SRP254626 362.56
SRR11452232 whole organisms · ambient pH treatment whole organisms blastula ambient pH treatment SRP254626 343.10
SRR11452240 whole organisms · ambient pH treatment whole organisms fertilized embryo ambient pH treatment SRP254626 274.39
SRR11452262 whole organisms · ambient pH treatment whole organisms egg ambient pH treatment SRP254626 272.26
SRR11452228 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 254.40
SRR11452231 whole organisms · ambient pH treatment whole organisms blastula ambient pH treatment SRP254626 253.60
SRR11452233 whole organisms · ambient pH treatment whole organisms morula ambient pH treatment SRP254626 253.23
SRR11452234 whole organisms · ambient pH treatment whole organisms morula ambient pH treatment SRP254626 241.26
SRR11452230 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 236.76
SRR11452222 whole organisms · ambient pH treatment whole organisms planulae ambient pH treatment SRP254626 206.07
SRR11452258 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 759.01
SRR11452253 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 617.05
SRR11452247 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 568.34
SRR11452249 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 551.98
SRR11452255 whole organisms · low pH treatment whole organisms cleavage low pH treatment SRP254626 505.29
SRR11452238 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 492.87
SRR11452236 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 484.23
SRR11452245 whole organisms · low pH treatment whole organisms prawn chip low pH treatment SRP254626 482.48
SRR11452241 whole organisms · low pH treatment whole organisms gastrula low pH treatment SRP254626 455.98
SRR11452216 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 379.54
SRR11452224 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 288.89
SRR11452221 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 276.12
SRR11452218 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 274.33
SRR11452223 whole organisms · low pH treatment whole organisms planulae low pH treatment SRP254626 265.77
SRR11452229 whole organisms · low pH treatment whole organisms fertilized embryo low pH treatment SRP254626 209.49
SRR11452257 whole organisms · extra low pH treatment pH treatment whole organisms cleavage extra low pH treatment pH treatment SRP254626 662.90
SRR11452244 whole organisms · extra low pH treatment pH treatment whole organisms prawn chip extra low pH treatment pH treatment SRP254626 619.26
SRR11452248 whole organisms · extra low pH treatment pH treatment whole organisms prawn chip extra low pH treatment pH treatment SRP254626 546.38
SRR11452256 whole organisms · extra low pH treatment pH treatment whole organisms cleavage extra low pH treatment pH treatment SRP254626 500.89
SRR11452235 whole organisms · extra low pH treatment pH treatment whole organisms gastrula extra low pH treatment pH treatment SRP254626 493.28
SRR11452239 whole organisms · extra low pH treatment pH treatment whole organisms gastrula extra low pH treatment pH treatment SRP254626 486.05
SRR11452219 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 370.43
SRR11452220 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 348.03
SRR11452261 whole organisms · extra low pH treatment pH treatment whole organisms fertilized embryo extra low pH treatment pH treatment SRP254626 310.67
SRR11452226 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 284.05
SRR11452227 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 244.84
SRR11452225 whole organisms · extra low pH treatment pH treatment whole organisms planulae extra low pH treatment pH treatment SRP254626 181.83

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora capitata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated13g424.t10.957909992107357
Negatively correlated12g20145.t1-0.891734323551739

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora capitata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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