Detailed information of g108.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: NKC13854.1, ornithine carbamoyltransferase [Gammaproteobacteria bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q72T26Ornithine carbamoyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) OX=267671 GN=argF PE=3 SV=1
Q8F2D1Ornithine carbamoyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) OX=189518 GN=argF PE=3 SV=1
Q51742Ornithine carbamoyltransferase, anabolic OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=argF PE=1 SV=6
Gene familySubfamily
Transcription Factors FamilyPAX

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00163Ribosomal_S4Ribosomal protein S4/S9 N-terminal domainFamilyInterproscan
PF01479S4S4 domainDomainInterproscan
PF07297DPM2Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2)FamilyInterproscan
PF00005ABC_tranABC transporterDomainInterproscan
PF00664ABC_membraneABC transporter transmembrane regionFamilyInterproscan
PF16528Exo84_CExocyst component 84 C-terminalRepeatInterproscan
PF01778Ribosomal_L28eRibosomal L28e protein familyFamilyInterproscan
PF04874Mak16Mak16 protein C-terminal regionFamilyInterproscan
PF00292PAX'Paired box' domainDomainInterproscan
PF12516DUF3719Protein of unknown function (DUF3719)FamilyInterproscan
PF00185OTCaceAspartate/ornithine carbamoyltransferase, Asp/Orn binding domainDomainInterproscan
PF02729OTCace_NAspartate/ornithine carbamoyltransferase, carbamoyl-P binding domainDomainInterproscan
PF00176SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF13892DBINODNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005709FamilySmall ribosomal subunit protein uS4, bacterial-typeInterproscan
IPR018079Conserved_siteSmall ribosomal subunit protein uS4, conserved siteInterproscan
IPR036986Homologous_superfamilyRNA-binding S4 domain superfamilyInterproscan
IPR002942DomainRNA-binding S4 domainInterproscan
IPR001912DomainSmall ribosomal subunit protein uS4, N-terminalInterproscan
IPR022801FamilySmall ribosomal subunit protein uS4Interproscan
IPR009914FamilyDolichol phosphate-mannose biosynthesis regulatoryInterproscan
IPR003439DomainABC transporter-like, ATP-binding domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR036640Homologous_superfamilyABC transporter type 1, transmembrane domain superfamilyInterproscan
IPR039421FamilyType 1 protein exporterInterproscan
IPR017871Conserved_siteABC transporter-like, conserved siteInterproscan
IPR011527DomainABC transporter type 1, transmembrane domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032403DomainExocyst component Exo84, C-terminalInterproscan
IPR033961FamilyExocyst complex component Exo84Interproscan
IPR016159Homologous_superfamilyCullin repeat-like-containing domain superfamilyInterproscan
IPR042561Homologous_superfamilyExocyst component Exo84, C-terminal, subdomain 1Interproscan
IPR042560Homologous_superfamilyExocyst component Exo84, C-terminal, subdomain 2Interproscan
IPR029004DomainRibosomal eL28/Mak16Interproscan
IPR006958FamilyMak16 proteinInterproscan
IPR024146FamilyClaspinInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR001523DomainPaired domainInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR043565FamilyPAX familyInterproscan
IPR022194DomainDomain of unknown function DUF3719Interproscan
IPR039630FamilyProtein FAM149Interproscan
IPR006131DomainAspartate/ornithine carbamoyltransferase, Asp/Orn-binding domainInterproscan
IPR006130FamilyAspartate/ornithine carbamoyltransferaseInterproscan
IPR036901Homologous_superfamilyAspartate/ornithine carbamoyltransferase superfamilyInterproscan
IPR006132DomainAspartate/ornithine carbamoyltransferase, carbamoyl-P bindingInterproscan
IPR002292FamilyOrnithine/putrescine carbamoyltransferaseInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR049730DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR000330DomainSNF2, N-terminalInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR050520FamilyINO80/SWR1 chromatin remodeling helicaseInterproscan
IPR020838DomainDBINO domainInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR038718Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR1183130S 40S RIBOSOMAL PROTEINInterproscan
PTHR15039DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEINInterproscan
PTHR24221ATP-BINDING CASSETTE SUB-FAMILY BInterproscan
PTHR21426EXOCYST COMPLEX COMPONENT 8Interproscan
PTHR23405MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATEDInterproscan
PTHR14396CLASPINInterproscan
PTHR45636PAIRED BOX PROTEIN PAX-6-RELATED-RELATEDInterproscan
PTHR31997AGAP003710-PAInterproscan
PTHR45753ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIALInterproscan
PTHR45685HELICASE SRCAP-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015935Cellular Componentsmall ribosomal subunitInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0042274Biological Processribosomal small subunit biogenesisInterproscan
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0019348Biological Processdolichol metabolic processInterproscan
GO:0030234Molecular Functionenzyme regulator activityInterproscan
GO:0006506Biological ProcessGPI anchor biosynthetic processInterproscan
GO:0033185Cellular Componentdolichol-phosphate-mannose synthase complexInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0034040Molecular FunctionATPase-coupled lipid transmembrane transporter activityInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan
GO:0140359Molecular FunctionABC-type transporter activityInterproscan
GO:0000145Cellular ComponentexocystInterproscan
GO:0006887Biological ProcessexocytosisInterproscan
GO:0006893Biological ProcessGolgi to plasma membrane transportInterproscan
GO:0008104Biological Processprotein localizationInterproscan
GO:0000460Biological Processmaturation of 5.8S rRNAInterproscan
GO:0000470Biological Processmaturation of LSU-rRNAInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0030687Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0007095Biological Processmitotic G2 DNA damage checkpoint signalingInterproscan
GO:0010997Molecular Functionanaphase-promoting complex bindingInterproscan
GO:0032147Biological Processactivation of protein kinase activityInterproscan
GO:0033314Biological Processmitotic DNA replication checkpoint signalingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0006520Biological Processamino acid metabolic processInterproscan
GO:0016597Molecular Functionamino acid bindingInterproscan
GO:0016743Molecular Functioncarboxyl- or carbamoyltransferase activityInterproscan
GO:0004585Molecular Functionornithine carbamoyltransferase activityInterproscan
GO:0019240Biological Processcitrulline biosynthetic processInterproscan
GO:0042450Biological Processarginine biosynthetic process via ornithineInterproscan
GO:0140658Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0031011Cellular ComponentIno80 complexInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan
GO:0043044Biological Processchromatin remodelingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K09658DPM2; dolichol phosphate-mannose biosynthesis regulatory protein-Cilium and associated proteinsko03037deepkoala
Chromosome and associated proteinsko03036deepkoala
Ribosome biogenesisko03009deepkoala
Ribosomeko03011deepkoala
Chromosome and associated proteinsko03036deepkoala
Glycosylphosphatidylinositol (GPI)-anchor biosynthesisko00563deepkoala

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