Gene detail

Detailed information of g1080.t1 in Montipora capitata

Genomic Location: Sc0000012:725514...738217
NR annotation: XP_044165746.1, LOW QUALITY PROTEIN: ras GTPase-activating protein nGAP-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g1080.t1

atgtctcctcgtcttcacagcatcaagaaatctattcaaccgacaagagacatacaatacaggaccgacattggtttaacggtgtggattgtcgaggccaagggactcacggacaaaccaaaacggcggtttttctgcgagctgtatttcgataaagccatctacgctaagacatcttcaaagacaaagtcagatcttttgttctggggagaaaattttgccttcaatgatttacccgaagtacagactataacggtacaaatttacaaggaagtcgacggcaagaacaagaaagagaagagaaagcctgttgcatctgtagatgtaccagttgactcattggaaattggagttgaagtggaaaaatggttcccggttacaatggaaagtaacaaaaccaatggtggagagtcacccagcatcagactgcgatttaaatatcagtatctaaaacgtaactacatgacattgtgccaagcgttggaaccagtggtcagcgtgaaactaaaggacgagatctctcgggtgctcttgagaattctacaggctaatgggaaagcaacggaatttcttgcaagtatagtgctggaagaagtaacaaatttggaagatgaaaatcttgtgtttcgtggtaattcctttgctacaaaagctatggattcctatatgaagatgataggtgaatcggagacactgggagattttgttcagtctgtttacgaatttgaggacgattgtgagtggttccatcttcttgcgatttttgtgtcctgccattttatctcccagcctgtttcatctagtgcaaggttcggtggaaaagaagaatatatgggttttatgaacggatttgtggaaaaagagttcgtgaatatgagaagatttatcgatgacatatcacaacaatcaagatcggacacttgtgaaaaccagtttgacggaattattgactgcggccgagaactcgccctcatgtactccatcttaaaagatgtcaccagcaagatgaaccaggatgctgcagaagcccttcgccctctccagtttgtactcaagtccctacaagagacataccacgattctgaaaggaattttgtcattggaaatgaaagtatagtggcacatcggaaatgggcgtcatcctctgacctagttactgatcaggacaagagcaacatcactcttaccccagtgtcacaaataaggattatgaagtcaccaaagagagcgcagaattccttggacgatagttcgcaagacgctagtctattctacaacggtagcacaccgactgcgaagacccctgaacgtttgacggtatcgcgctacgataaatcgattctctcgcctatttccgatgttgatcctccagtttcctcacccaggaagcatgatttacaaagcagcctcaggcggcgctcgtatcggagagctatcaacgaaagcagtagtaacaattcgatcgaatctgccaaagattcttctgaaaacgggttgatgagcaagaaaacgttggattcacctcgtcggtctctcaaagaaggacctcttattgtttcaagtgtggatggcgggacgccaggtgacagtcgggtaatttacaagggagatactgggccaaaacggatttccaggacacttcctgcctcgcgccgacgtgataataaagaaggaattgatgttccggtagacactaaatctccagttataacagatcagtctcgaacggcatctcttgaaagacagtcctcgcctaaaccacatccgcttgcaacaagtgactgtctaagaaggtcatctggagaaaaggatgcttcttttttgtcttcatctccccaatgttctcgcaggccatcacgcacgagcaacaactcagccaagttcttgaatcctgatcatgtagctcgcagttcatcgcggactagcagcagctctagtggtagtgacgagagttggcacagcgtagcaagcagcgtggaaggtggccgaggcagaagaagggtgcggaaaatgacacgttcaccgagtcctgaggacagcggagttggaaccgaaacgatttgggaaaggatggcgcctaaagcagagcccgaagacttcgtgaacggttacgaccttgtctctcccaagactgcagctgagtacgaaaaagagctcaccaatcttcgcgaggaactgctggagacaaagaggactctagcctcaacccacgaacagttgattttgcaagagtccagcacacacaaactcgtagcgtccttcaaagaaagactagcagaaagcgaaaatgccttgcaacagttgagagaggaaaaagatcaagaaatgaaggaacttcttgatcggttggtaagcgtggaatctgaattgcgaaaagaacagaaagagatgcaagaggtgatccaagccaaacaggtcatcatcgaagcccaagaaagaagaatcaagtcggttgactcgaacaatgctaagttaattgccaccttaaatcagattggggcgtcaagaaacaacaataacaacaaattattgaattatcccagtagtgacctctag

Transcript

g1080.t1

ATGTCTCCTCGTCTTCACAGCATCAAGAAATCTATTCAACCGACAAGAGACATACAATACAGGACCGACATTGGTTTAACGGTGTGGATTGTCGAGGCCAAGGGACTCACGGACAAACCAAAACGGCGGTTTTTCTGCGAGCTGTATTTCGATAAAGCCATCTACGCTAAGACATCTTCAAAGACAAAGTCAGATCTTTTGTTCTGGGGAGAAAATTTTGCCTTCAATGATTTACCCGAAGTACAGACTATAACGGTACAAATTTACAAGGAAGTCGACGGCAAGAACAAGAAAGAGAAGAGAAAGCCTGTTGCATCTGTAGATGTACCAGTTGACTCATTGGAAATTGGAGTTGAAGTGGAAAAATGGTTCCCGGTTACAATGGAAAGTAACAAAACCAATGGTGGAGAGTCACCCAGCATCAGACTGCGATTTAAATATCAGTATCTAAAACGTAACTACATGACATTGTGCCAAGCGTTGGAACCAGTGGTCAGCGTGAAACTAAAGGACGAGATCTCTCGGGTGCTCTTGAGAATTCTACAGGCTAATGGGAAAGCAACGGAATTTCTTGCAAGTATAGTGCTGGAAGAAGTAACAAATTTGGAAGATGAAAATCTTGTGTTTCGTGGTAATTCCTTTGCTACAAAAGCTATGGATTCCTATATGAAGATGATAGGTGAATCGGAGACACTGGGAGATTTTGTTCAGTCTGTTTACGAATTTGAGGACGATTGTGAGTGGTTCCATCTTCTTGCGATTTTTGTGTCCTGCCATTTTATCTCCCAGCCTGTTTCATCTAGTGCAAGGTTCGGTGGAAAAGAAGAATATATGGGTTTTATGAACGGATTTGTGGAAAAAGAGTTCGTGAATATGAGAAGATTTATCGATGACATATCACAACAATCAAGATCGGACACTTGTGAAAACCAGTTTGACGGAATTATTGACTGCGGCCGAGAACTCGCCCTCATGTACTCCATCTTAAAAGATGTCACCAGCAAGATGAACCAGGATGCTGCAGAAGCCCTTCGCCCTCTCCAGTTTGTACTCAAGTCCCTACAAGAGACATACCACGATTCTGAAAGGAATTTTGTCATTGGAAATGAAAGTATAGTGGCACATCGGAAATGGGCGTCATCCTCTGACCTAGTTACTGATCAGGACAAGAGCAACATCACTCTTACCCCAGTGTCACAAATAAGGATTATGAAGTCACCAAAGAGAGCGCAGAATTCCTTGGACGATAGTTCGCAAGACGCTAGTCTATTCTACAACGGTAGCACACCGACTGCGAAGACCCCTGAACGTTTGACGGTATCGCGCTACGATAAATCGATTCTCTCGCCTATTTCCGATGTTGATCCTCCAGTTTCCTCACCCAGGAAGCATGATTTACAAAGCAGCCTCAGGCGGCGCTCGTATCGGAGAGCTATCAACGAAAGCAGTAGTAACAATTCGATCGAATCTGCCAAAGATTCTTCTGAAAACGGGTTGATGAGCAAGAAAACGTTGGATTCACCTCGTCGGTCTCTCAAAGAAGGACCTCTTATTGTTTCAAGTGTGGATGGCGGGACGCCAGGTGACAGTCGGGTAATTTACAAGGGAGATACTGGGCCAAAACGGATTTCCAGGACACTTCCTGCCTCGCGCCGACGTGATAATAAAGAAGGAATTGATGTTCCGGTAGACACTAAATCTCCAGTTATAACAGATCAGTCTCGAACGGCATCTCTTGAAAGACAGTCCTCGCCTAAACCACATCCGCTTGCAACAAGTGACTGTCTAAGAAGGTCATCTGGAGAAAAGGATGCTTCTTTTTTGTCTTCATCTCCCCAATGTTCTCGCAGGCCATCACGCACGAGCAACAACTCAGCCAAGTTCTTGAATCCTGATCATGTAGCTCGCAGTTCATCGCGGACTAGCAGCAGCTCTAGTGGTAGTGACGAGAGTTGGCACAGCGTAGCAAGCAGCGTGGAAGGTGGCCGAGGCAGAAGAAGGGTGCGGAAAATGACACGTTCACCGAGTCCTGAGGACAGCGGAGTTGGAACCGAAACGATTTGGGAAAGGATGGCGCCTAAAGCAGAGCCCGAAGACTTCGTGAACGGTTACGACCTTGTCTCTCCCAAGACTGCAGCTGAGTACGAAAAAGAGCTCACCAATCTTCGCGAGGAACTGCTGGAGACAAAGAGGACTCTAGCCTCAACCCACGAACAGTTGATTTTGCAAGAGTCCAGCACACACAAACTCGTAGCGTCCTTCAAAGAAAGACTAGCAGAAAGCGAAAATGCCTTGCAACAGTTGAGAGAGGAAAAAGATCAAGAAATGAAGGAACTTCTTGATCGGTTGGTAAGCGTGGAATCTGAATTGCGAAAAGAACAGAAAGAGATGCAAGAGGTGATCCAAGCCAAACAGGTCATCATCGAAGCCCAAGAAAGAAGAATCAAGTCGGTTGACTCGAACAATGCTAAGTTAATTGCCACCTTAAATCAGATTGGGGCGTCaagaaacaacaataacaacaaattATTGAATTATCCCAGTAGTGACCTCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UHC7	Disabled homolog 2-interacting protein OS=Mus musculus OX=10090 GN=Dab2ip PE=1 SV=1
Q6P730	Disabled homolog 2-interacting protein OS=Rattus norvegicus OX=10116 GN=Dab2ip PE=1 SV=1
Q5VWQ8	Disabled homolog 2-interacting protein OS=Homo sapiens OX=9606 GN=DAB2IP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF12004 all species →	DAB2P_C	Disabled homolog 2-interacting protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR001936 all species →	Domain	Ras GTPase-activating domain	Interproscan
IPR039360 all species →	Family	Ras GTPase-activating protein	Interproscan
IPR021887 all species →	Domain	Disabled homolog 2-interacting protein, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10194 all species →	RAS GTPASE-ACTIVATING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g1080.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g1080.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

157.5Max TPM

44.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	54.18	157.54
whole organisms · low pH treatment	15	15	35.83	78.25
whole organisms · extra low pH treatment pH treatment	12	12	36.80	75.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	157.54
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	147.76
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	143.41
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	117.11
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	73.61
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	70.91
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	70.03
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	49.85
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	43.13
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	42.96
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	42.64
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	39.66
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	36.87
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	19.13
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	14.16
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	14.15
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	13.30
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	12.97
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	11.33
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	9.64
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	7.55
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	78.25
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	72.98
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	67.09
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	45.77
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	44.82
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	44.00
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	42.08
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	38.70
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	36.42
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	16.93
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	14.61
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	12.28
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	9.79
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	7.59
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	6.16
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	75.26
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	75.11
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	69.26
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	48.44
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	46.19
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	36.63
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	30.95
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	14.78
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	13.22
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	13.08
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	10.98
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	7.63

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.