Detailed information of g1089.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_012558002.1, CBY1-interacting BAR domain-containing protein 1 isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6P616Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis OX=8364 GN=rbm22 PE=2 SV=1
Q5ZM16Pre-mRNA-splicing factor RBM22 OS=Gallus gallus OX=9031 GN=RBM22 PE=2 SV=1
Q7ZXB5Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis OX=8355 GN=rbm22 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00549Ligase_CoACoA-ligaseDomainInterproscan
PF08442ATP-grasp_2ATP-grasp domainDomainInterproscan
PF00024PAN_1PAN domainDomainInterproscan
PF06730FAM92FAM92 proteinFamilyInterproscan
PF00743FMO-likeFlavin-binding monooxygenase-likeFamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF21369STL11_NSTL11, N-terminalDomainInterproscan
PF00035dsrmDouble-stranded RNA binding motifDomainInterproscan
PF02137A_deaminAdenosine-deaminase (editase) domainFamilyInterproscan
PF01636APHPhosphotransferase enzyme familyFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF17919RT_RNaseH_2RNase H-like domain found in reverse transcriptaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005049FamilySTELLO-likeInterproscan
IPR016102Homologous_superfamilySuccinyl-CoA synthetase-likeInterproscan
IPR005809FamilySuccinate--CoA ligase-like, beta subunitInterproscan
IPR011761DomainATP-grasp foldInterproscan
IPR005811DomainATP-citrate synthase/succinyl-CoA ligase, C-terminal domainInterproscan
IPR013815Homologous_superfamilyATP-grasp fold, subdomain 1Interproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR017440Active_siteATP-citrate lyase/succinyl-CoA ligase, active siteInterproscan
IPR013650DomainATP-grasp fold, succinyl-CoA synthetase-typeInterproscan
IPR033847Conserved_siteATP-citrate lyase/succinyl-CoA ligase, conserved siteInterproscan
IPR003609DomainPAN/Apple domainInterproscan
IPR009602FamilyCBY1-interacting BAR domain-containing protein/FAM92Interproscan
IPR027267Homologous_superfamilyAH/BAR domain superfamilyInterproscan
IPR020946FamilyFlavin monooxygenase-likeInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan
IPR050346FamilyFlavin-containing MonooxygenasesInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR048995DomainSTL11/RBM22-like, N-terminal domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000571DomainZinc finger, CCCH-typeInterproscan
IPR039171FamilyPre-mRNA-splicing factor Cwc2/Slt11Interproscan
IPR036855Homologous_superfamilyZinc finger, CCCH-type superfamilyInterproscan
IPR002466DomainAdenosine deaminase/editaseInterproscan
IPR014720DomainDouble-stranded RNA-binding domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR050249FamilyPseudomonas-type Homoserine KinaseInterproscan
IPR002575DomainAminoglycoside phosphotransferaseInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR039226FamilySki3/TTC37Interproscan
IPR043128Homologous_superfamilyReverse transcriptase/Diguanylate cyclase domainInterproscan
IPR050951FamilyRetrovirus-related Pol polyproteinInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR041577DomainReverse transcriptase/retrotransposon-derived protein, RNase H-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR31362GLYCOSYLTRANSFERASE STELLO1-RELATEDInterproscan
PTHR11815SUCCINYL-COA SYNTHETASE BETA CHAINInterproscan
PTHR21223UNCHARACTERIZEDInterproscan
PTHR23023DIMETHYLANILINE MONOOXYGENASEInterproscan
PTHR14089PRE-MRNA-SPLICING FACTOR RBM22Interproscan
PTHR10910EUKARYOTE SPECIFIC DSRNA BINDING PROTEINInterproscan
PTHR21064UNCHARACTERIZEDInterproscan
PTHR15704SUPERKILLER 3 PROTEIN-RELATEDInterproscan
PTHR37984PROTEIN CBG26694Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006099Biological Processtricarboxylic acid cycleInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004775Molecular Functionsuccinate-CoA ligase (ADP-forming) activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006104Biological Processsuccinyl-CoA metabolic processInterproscan
GO:0042709Cellular Componentsuccinate-CoA ligase complexInterproscan
GO:0035869Cellular Componentciliary transition zoneInterproscan
GO:0036064Cellular Componentciliary basal bodyInterproscan
GO:0060271Biological Processcilium assemblyInterproscan
GO:0004499Molecular FunctionN,N-dimethylaniline monooxygenase activityInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0050661Molecular FunctionNADP bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0000974Cellular ComponentPrp19 complexInterproscan
GO:0017070Molecular FunctionU6 snRNA bindingInterproscan
GO:0036002Molecular Functionpre-mRNA bindingInterproscan
GO:0071006Cellular ComponentU2-type catalytic step 1 spliceosomeInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:0004000Molecular Functionadenosine deaminase activityInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0003725Molecular Functiondouble-stranded RNA bindingInterproscan
GO:0003726Molecular Functiondouble-stranded RNA adenosine deaminase activityInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006382Biological Processadenosine to inosine editingInterproscan
GO:0008251Molecular FunctiontRNA-specific adenosine deaminase activityInterproscan
GO:0019202Molecular Functionamino acid kinase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006401Biological ProcessRNA catabolic processInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0055087Cellular ComponentSki complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K01902sucD; succinyl-CoA synthetase alpha subunitEC:6.2.1.5
Spliceosomeko03041deepkoala
Cell cycle - yeastko04111deepkoala
Carbon fixation pathways in prokaryotesko00720deepkoala

TOP