Detailed information of g109.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: MBU2643235.1, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [bacterium]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q0AYR3UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) OX=335541 GN=murE PE=3 SV=1
Q97H84UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=murE1 PE=3 SV=1
Q182Z8UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Clostridioides difficile (strain 630) OX=272563 GN=murE PE=3 SV=1
Gene familySubfamily
Transcription Factors FamilyZBTB
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|BTB
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyUBD|Other|SH3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01168Ala_racemase_NAlanine racemase, N-terminal domainDomainInterproscan
PF02875Mur_ligase_CMur ligase family, glutamate ligase domainDomainInterproscan
PF08245Mur_ligase_MMur ligase middle domainDomainInterproscan
PF00842Ala_racemase_CAlanine racemase, C-terminal domainDomainInterproscan
PF00155Aminotran_1_2Aminotransferase class I and IIDomainInterproscan
PF01979Amidohydro_1Amidohydrolase familyDomainInterproscan
PF00651BTBBTB/POZ domainDomainInterproscan
PF07707BACKBTB And C-terminal KelchDomainInterproscan
PF01344Kelch_1Kelch motifRepeatInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF03109ABC1ABC1 atypical kinase-like domainDomainInterproscan
PF083957tm_77tm Chemosensory receptorFamilyInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF02277DBI_PRTPhosphoribosyltransferaseDomainInterproscan
PF00488MutS_VMutS domain VDomainInterproscan
PF05190MutS_IVMutS family domain IVDomainInterproscan
PF00018SH3_1SH3 domainDomainInterproscan
PF00790VHSVHS domainRepeatInterproscan
PF00520Ion_transIon transport proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036565Homologous_superfamilyMur-like, catalytic domain superfamilyInterproscan
IPR009006Homologous_superfamilyAlanine racemase/group IV decarboxylase, C-terminalInterproscan
IPR036615Homologous_superfamilyMur ligase, C-terminal domain superfamilyInterproscan
IPR011079DomainAlanine racemase, C-terminalInterproscan
IPR005761FamilyUDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligaseInterproscan
IPR000821FamilyAlanine racemaseInterproscan
IPR001608DomainAlanine racemase, N-terminalInterproscan
IPR004101DomainMur ligase, C-terminalInterproscan
IPR013221DomainMur ligase, centralInterproscan
IPR029066Homologous_superfamilyPLP-binding barrelInterproscan
IPR018109Conserved_siteFolylpolyglutamate synthetase, conserved siteInterproscan
IPR035911Homologous_superfamilyMurE/MurF, N-terminalInterproscan
IPR015422Homologous_superfamilyPyridoxal phosphate-dependent transferase, small domainInterproscan
IPR015421Homologous_superfamilyPyridoxal phosphate-dependent transferase, major domainInterproscan
IPR004839DomainAminotransferase, class I/classIIInterproscan
IPR015424Homologous_superfamilyPyridoxal phosphate-dependent transferaseInterproscan
IPR050596FamilyClass-I Pyridoxal-Phosphate-Dependent AminotransferaseInterproscan
IPR051607FamilyMetallo-dependent HydrolasesInterproscan
IPR011059Homologous_superfamilyMetal-dependent hydrolase, composite domain superfamilyInterproscan
IPR014311FamilyGuanine deaminaseInterproscan
IPR006680DomainAmidohydrolase-relatedInterproscan
IPR032466Homologous_superfamilyMetal-dependent hydrolaseInterproscan
IPR011043Homologous_superfamilyGalactose oxidase/kelch, beta-propellerInterproscan
IPR011333Homologous_superfamilySKP1/BTB/POZ domain superfamilyInterproscan
IPR000210DomainBTB/POZ domainInterproscan
IPR006652RepeatKelch repeat type 1Interproscan
IPR011705DomainBTB/Kelch-associatedInterproscan
IPR017096FamilyBTB-kelch proteinInterproscan
IPR015915Homologous_superfamilyKelch-type beta propellerInterproscan
IPR050061FamilyPeptidoglycan biosynthesis MurCDEFInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR052596FamilyActivating Molecule in BECN1-Regulated AutophagyInterproscan
IPR011047Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan
IPR034646DomainADCK3-like domainInterproscan
IPR011009Homologous_superfamilyProtein kinase-like domain superfamilyInterproscan
IPR004147DomainABC1 atypical kinase-like domainInterproscan
IPR051409FamilyAtypical kinase ADCKInterproscan
IPR013604Family7TM chemosensory receptorInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR014014DomainRNA helicase, DEAD-box type, Q motifInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR036087Homologous_superfamilyNicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamilyInterproscan
IPR003200FamilyNicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferaseInterproscan
IPR045076FamilyDNA mismatch repair MutS familyInterproscan
IPR036187Homologous_superfamilyDNA mismatch repair protein MutS, core domain superfamilyInterproscan
IPR000432DomainDNA mismatch repair protein MutS, C-terminalInterproscan
IPR007861DomainDNA mismatch repair protein MutS, clampInterproscan
IPR001452DomainSH3 domainInterproscan
IPR002014DomainVHS domainInterproscan
IPR008942Homologous_superfamilyENTH/VHSInterproscan
IPR050670FamilySignal Transducing Adapter MoleculeInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR027359Homologous_superfamilyVoltage-dependent channel domain superfamilyInterproscan
IPR028798FamilyTwo pore channel protein 2Interproscan
IPR005821DomainIon transport domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23135MUR LIGASE FAMILY MEMBERInterproscan
PTHR46383ASPARTATE AMINOTRANSFERASEInterproscan
PTHR11271GUANINE DEAMINASEInterproscan
PTHR45632LD33804PInterproscan
PTHR43445UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATEDInterproscan
PTHR22874ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1Interproscan
PTHR43851-Interproscan
PTHR21421GUSTATORY RECEPTORInterproscan
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan
PTHR43463NICOTINATE-NUCLEOTIDE--DIMETHYLBENZIMIDAZOLE PHOSPHORIBOSYLTRANSFERASEInterproscan
PTHR11361DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBERInterproscan
PTHR45929JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULEInterproscan
PTHR46768TWO PORE CALCIUM CHANNEL PROTEIN 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0009058Biological Processbiosynthetic processInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0016881Molecular Functionacid-amino acid ligase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008360Biological Processregulation of cell shapeInterproscan
GO:0051301Biological Processcell divisionInterproscan
GO:0006522Biological Processalanine metabolic processInterproscan
GO:0008784Molecular Functionalanine racemase activityInterproscan
GO:0004326Molecular Functiontetrahydrofolylpolyglutamate synthase activityInterproscan
GO:0009396Biological Processfolic acid-containing compound biosynthetic processInterproscan
GO:0030170Molecular Functionpyridoxal phosphate bindingInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0008892Molecular Functionguanine deaminase activityInterproscan
GO:0019239Molecular Functiondeaminase activityInterproscan
GO:0046098Biological Processguanine metabolic processInterproscan
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bondsInterproscan
GO:0006147Biological Processguanine catabolic processInterproscan
GO:0016787Molecular Functionhydrolase activityInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006914Biological ProcessautophagyInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0006744Biological Processubiquinone biosynthetic processInterproscan
GO:0007606Biological Processsensory perception of chemical stimulusInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0050909Biological Processsensory perception of tasteInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007276Biological Processgamete generationInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0043186Cellular ComponentP granuleInterproscan
GO:0008939Molecular Functionnicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activityInterproscan
GO:0003690Molecular Functiondouble-stranded DNA bindingInterproscan
GO:0006298Biological Processmismatch repairInterproscan
GO:0030983Molecular Functionmismatched DNA bindingInterproscan
GO:0032301Cellular ComponentMutSalpha complexInterproscan
GO:0140664Molecular FunctionATP-dependent DNA damage sensor activityInterproscan
GO:0035091Molecular Functionphosphatidylinositol bindingInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0033565Cellular ComponentESCRT-0 complexInterproscan
GO:0043328Biological Processprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathwayInterproscan
GO:0005765Cellular Componentlysosomal membraneInterproscan
GO:0015280Molecular Functionligand-gated sodium channel activityInterproscan
GO:0019722Biological Processcalcium-mediated signalingInterproscan
GO:0022832Molecular Functionvoltage-gated channel activityInterproscan
GO:0075509Biological Processendocytosis involved in viral entry into host cellInterproscan
GO:0097682Molecular Functionintracellularly phosphatidylinositol-3,5-bisphosphate-gated monatomic cation channel activityInterproscan
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0055085Biological Processtransmembrane transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00768E2.4.2.21, cobU, cobT; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseEC:2.4.2.21
Peptidoglycan biosynthesis and degradation proteinsko01011deepkoala
Ion channelsko04040deepkoala
Chromosome and associated proteinsko03036deepkoala
Amino acid related enzymesko01007deepkoala
Membrane traffickingko04131deepkoala
Mitochondrial biogenesisko03029deepkoala
Purine metabolismko00230deepkoala
Porphyrin metabolismko00860deepkoala

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