Genomic Location: not available for this species
NR annotation: XP_047124905.1, utrophin-like isoform X1 [Hydra vulgaris]
Species Calvadosia cruxmelitensis · all data for this species · gene families
| UniProt accession | Description |
|---|---|
| P11533 | Dystrophin OS=Gallus gallus OX=9031 GN=DMD PE=2 SV=1 |
| O97592 | Dystrophin OS=Canis lupus familiaris OX=9615 GN=DMD PE=2 SV=1 |
| Q5GN48 | Dystrophin OS=Sus scrofa OX=9823 GN=DMD PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000935 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00397 all species → | WW | WW domain | Domain | Interproscan |
| PF09068 all species → | EF-hand_2 | EF hand | Domain | Interproscan |
| PF00435 all species → | Spectrin | Spectrin repeat | Domain | Interproscan |
| PF09069 all species → | EF-hand_3 | EF-hand | Domain | Interproscan |
| PF00569 all species → | ZZ | Zinc finger, ZZ type | Domain | Interproscan |
| PF01477 all species → | PLAT | PLAT/LH2 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035436 all species → | Family | Dystrophin/utrophin | Interproscan |
| IPR018159 all species → | Repeat | Spectrin/alpha-actinin | Interproscan |
| IPR011992 all species → | Homologous_superfamily | EF-hand domain pair | Interproscan |
| IPR000433 all species → | Domain | Zinc finger, ZZ-type | Interproscan |
| IPR050774 all species → | Family | KCMF1 and Dystrophin | Interproscan |
| IPR001202 all species → | Domain | WW domain | Interproscan |
| IPR036020 all species → | Homologous_superfamily | WW domain superfamily | Interproscan |
| IPR015153 all species → | Domain | EF-hand domain, type 1 | Interproscan |
| IPR002017 all species → | Repeat | Spectrin repeat | Interproscan |
| IPR015154 all species → | Domain | EF-hand domain, type 2 | Interproscan |
| IPR036392 all species → | Homologous_superfamily | PLAT/LH2 domain superfamily | Interproscan |
| IPR001024 all species → | Domain | PLAT/LH2 domain | Interproscan |
| IPR043145 all species → | Homologous_superfamily | Zinc finger, ZZ-type superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12268 all species → | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0099536 all species → | Biological Process | synaptic signaling | Interproscan |
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
g1094.t2.Genes whose expression across the transcriptome samples of Calvadosia cruxmelitensis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Calvadosia cruxmelitensis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | sequence table not available | – |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | sequence table not available | – |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
