Detailed information of g1097.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_001624857.1, 28S ribosomal protein S25, mitochondrial [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P61865Large ribosomal subunit protein uL11 OS=Caenorhabditis briggsae OX=6238 GN=rpl-12 PE=3 SV=1
P61866Large ribosomal subunit protein uL11 OS=Caenorhabditis elegans OX=6239 GN=rpl-12 PE=3 SV=1
P61284Large ribosomal subunit protein uL11 OS=Bos taurus OX=9913 GN=RPL12 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyDUB|UCH|UCH

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01088Peptidase_C12Ubiquitin carboxyl-terminal hydrolase, family 1DomainInterproscan
PF18031UCH_CUbiquitin carboxyl-terminal hydrolasesDomainInterproscan
PF20700MutatorMutator-like transposaseDomainInterproscan
PF02782FGGY_CFGGY family of carbohydrate kinases, C-terminal domainDomainInterproscan
PF00370FGGY_NFGGY family of carbohydrate kinases, N-terminal domainDomainInterproscan
PF01823MACPFMAC/Perforin domainDomainInterproscan
PF10258PHAX_RNA-bdPhosphorylated adapter RNA export protein, RNA-binding domainDomainInterproscan
PF13768VWA_3von Willebrand factor type A domainDomainInterproscan
PF00298Ribosomal_L11Ribosomal protein L11, RNA binding domainDomainInterproscan
PF03946Ribosomal_L11_NRibosomal protein L11, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001578DomainPeptidase C12, ubiquitin carboxyl-terminal hydrolaseInterproscan
IPR041507DomainPeptidase C12, C-terminal domainInterproscan
IPR038765Homologous_superfamilyPapain-like cysteine peptidase superfamilyInterproscan
IPR036959Homologous_superfamilyPeptidase C12, ubiquitin carboxyl-terminal hydrolase superfamilyInterproscan
IPR052267FamilyNexin-Dynein Regulatory Complex ComponentInterproscan
IPR049012DomainMutator-like transposase domainInterproscan
IPR040049FamilyRibosomal subunit protein mS25/mL61, mitochondrialInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR018485DomainCarbohydrate kinase FGGY, C-terminalInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR000577FamilyCarbohydrate kinase, FGGYInterproscan
IPR018484DomainCarbohydrate kinase FGGY, N-terminalInterproscan
IPR038092Homologous_superfamilyPhosphorylated adapter RNA export protein, RNA-binding domain superfamilyInterproscan
IPR020864DomainMembrane attack complex component/perforin (MACPF) domainInterproscan
IPR019385DomainPhosphorylated adapter RNA export protein, RNA-binding domainInterproscan
IPR039707FamilyMacrophage-expressed gene 1 proteinInterproscan
IPR039662FamilyCohesin subunit Scc3/SAInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR020783DomainLarge ribosomal subunit protein uL11, C-terminalInterproscan
IPR036796Homologous_superfamilyLarge ribosomal subunit protein uL11, N-terminal domain superfamilyInterproscan
IPR000911FamilyRibosomal protein uL11Interproscan
IPR020784DomainLarge ribosomal subunit protein uL11, N-terminalInterproscan
IPR020785Conserved_siteLarge ribosomal subunit protein uL11, conserved siteInterproscan
IPR036769Homologous_superfamilyLarge ribosomal subunit protein uL11, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10589UBIQUITIN CARBOXYL-TERMINAL HYDROLASEInterproscan
PTHR14690UNCHARACTERIZEDInterproscan
PTHR13274MITOCHONDRIAL RIBOSOMAL PROTEIN S25Interproscan
PTHR10196SUGAR KINASEInterproscan
PTHR31463MACROPHAGE-EXPRESSED GENE 1 PROTEINInterproscan
PTHR11199STROMAL ANTIGENInterproscan
PTHR46478VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3AInterproscan
PTHR1166160S RIBOSOMAL PROTEIN L12Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004843Molecular Functioncysteine-type deubiquitinase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016579Biological Processprotein deubiquitinationInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005975Biological Processcarbohydrate metabolic processInterproscan
GO:0016301Molecular Functionkinase activityInterproscan
GO:0004856Molecular FunctionD-xylulokinase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0005997Biological Processxylulose metabolic processInterproscan
GO:0016310Biological ProcessphosphorylationInterproscan
GO:0000785Cellular ComponentchromatinInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007062Biological Processsister chromatid cohesionInterproscan
GO:0008278Cellular Componentcohesin complexInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0015934Cellular Componentlarge ribosomal subunitInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0070180Molecular Functionlarge ribosomal subunit rRNA bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K00854xylB, XYLB; xylulokinaseEC:2.7.1.17
Ribosomeko03011deepkoala
Transportersko02000deepkoala
Chromosome and associated proteinsko03036deepkoala
Pentose and glucuronate interconversionsko00040deepkoala

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