Gene detail

Detailed information of g11.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: ERI95394.1, hypothetical protein HMPREF1982_00259 [Clostridiales bacterium oral taxon 876 str. F0540]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5JT25	Ras-related protein Rab-41 OS=Homo sapiens OX=9606 GN=RAB41 PE=1 SV=2
P36017	Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS21 PE=1 SV=1
Q40521	Ras-related protein Rab11B OS=Nicotiana tabacum OX=4097 GN=RAB11B PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000005 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000014 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000044 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000847 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0000975 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001369 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001456 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0001582 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0002668 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0004126 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0007814 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0009758 (this species only) · gene tree & orthology
Orthogroup (gene family)	OG0033287 (this species only) · gene tree & orthology
Transcription factor family	zf-C2H2 · all TF in this species
Transcription factor family	MH1 · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01863 all species →	YgjP-like	YgjP-like, metallopeptidase domain	Family	Interproscan
PF03165 all species →	MH1	MH1 domain	Domain	Interproscan
PF03166 all species →	MH2	MH2 domain	Family	Interproscan
PF02210 all species →	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF10417 all species →	1-cysPrx_C	C-terminal domain of 1-Cys peroxiredoxin	Domain	Interproscan
PF00578 all species →	AhpC-TSA	AhpC/TSA family	Domain	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF16189 all species →	Creatinase_N_2	Creatinase/Prolidase N-terminal domain	Domain	Interproscan
PF01423 all species →	LSM	LSM domain	Domain	Interproscan
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan
PF16656 all species →	Pur_ac_phosph_N	Purple acid Phosphatase, N-terminal domain	Domain	Interproscan
PF16206 all species →	Mon2_C	C-terminal region of Mon2 protein	Family	Interproscan
PF09324 all species →	Sec7-like_HDS	Mon2/Sec7/BIG1-like, HDS	Domain	Interproscan
PF16213 all species →	DCB	Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain	Domain	Interproscan
PF12783 all species →	Sec7-like_HUS	Mon2/Sec7/BIG1-like, HUS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002725 all species →	Domain	YgjP-like, metallopeptidase domain	Interproscan
IPR053136 all species →	Family	UTP pyrophosphatase-like	Interproscan
IPR008984 all species →	Homologous_superfamily	SMAD/FHA domain superfamily	Interproscan
IPR003619 all species →	Domain	MAD homology 1, Dwarfin-type	Interproscan
IPR001132 all species →	Domain	SMAD domain, Dwarfin-type	Interproscan
IPR036578 all species →	Homologous_superfamily	SMAD MH1 domain superfamily	Interproscan
IPR017855 all species →	Homologous_superfamily	SMAD-like domain superfamily	Interproscan
IPR013019 all species →	Domain	MAD homology, MH1	Interproscan
IPR013790 all species →	Family	Dwarfin	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR019479 all species →	Domain	Peroxiredoxin, C-terminal	Interproscan
IPR050217 all species →	Family	Thiol-specific antioxidant peroxiredoxin	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR000866 all species →	Domain	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	Interproscan
IPR050227 all species →	Family	Ras-related protein Rab	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR050422 all species →	Family	Xaa-Pro aminopeptidase P	Interproscan
IPR029149 all species →	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR044641 all species →	Family	Sm-like protein Lsm7/SmG	Interproscan
IPR047575 all species →	Domain	Sm domain	Interproscan
IPR017132 all species →	Family	Sm-like protein Lsm7	Interproscan
IPR001163 all species →	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR041792 all species →	Domain	Purple acid phosphatase, metallophosphatase domain	Interproscan
IPR008963 all species →	Homologous_superfamily	Purple acid phosphatase-like, N-terminal	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR015914 all species →	Domain	Purple acid phosphatase, N-terminal	Interproscan
IPR032817 all species →	Domain	Mon2, C-terminal	Interproscan
IPR015403 all species →	Domain	Mon2/Sec7/BIG1-like, HDS	Interproscan
IPR032629 all species →	Domain	Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain	Interproscan
IPR032691 all species →	Domain	Mon2/Sec7/BIG1-like, HUS domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30399 all species →	UNCHARACTERIZED PROTEIN YGJP	Interproscan
PTHR13703 all species →	SMAD	Interproscan
PTHR10681 all species →	THIOREDOXIN PEROXIDASE	Interproscan
PTHR47977 all species →	RAS-RELATED PROTEIN RAB	Interproscan
PTHR43763 all species →	XAA-PRO AMINOPEPTIDASE 1	Interproscan
PTHR10553 all species →	SMALL NUCLEAR RIBONUCLEOPROTEIN	Interproscan
PTHR23235 all species →	KRUEPPEL-LIKE TRANSCRIPTION FACTOR	Interproscan
PTHR45778 all species →	PURPLE ACID PHOSPHATASE-RELATED	Interproscan
PTHR46704 all species →	CXC DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan
PTHR47027 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR10663 all species →	GUANYL-NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007179 all species →	Biological Process	transforming growth factor beta receptor signaling pathway	Interproscan
GO:0009653 all species →	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0060395 all species →	Biological Process	SMAD protein signal transduction	Interproscan
GO:0070411 all species →	Molecular Function	I-SMAD binding	Interproscan
GO:0071144 all species →	Cellular Component	heteromeric SMAD protein complex	Interproscan
GO:0140416 all species →	Molecular Function	transcription regulator inhibitor activity	Interproscan
GO:0051920 all species →	Molecular Function	peroxiredoxin activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0008379 all species →	Molecular Function	thioredoxin peroxidase activity	Interproscan
GO:0033554 all species →	Biological Process	cellular response to stress	Interproscan
GO:0042744 all species →	Biological Process	hydrogen peroxide catabolic process	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan
GO:0016209 all species →	Molecular Function	antioxidant activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005688 all species →	Cellular Component	U6 snRNP	Interproscan
GO:0005689 all species →	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0071004 all species →	Cellular Component	U2-type prespliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0097526 all species →	Cellular Component	spliceosomal tri-snRNP complex	Interproscan
GO:1990726 all species →	Cellular Component	Lsm1-7-Pat1 complex	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000956 all species →	Biological Process	nuclear-transcribed mRNA catabolic process	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003993 all species →	Molecular Function	acid phosphatase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03386	PRDX2_4, ahpC; peroxiredoxin 2/4	EC:1.11.1.24	Exosome	ko04147	deepkoala
K12379	HKB; huckebein	-	Transcription factors	ko03000	deepkoala
K12626	LSM7; U6 snRNA-associated Sm-like protein LSm7	-	Spliceosome	ko03041	deepkoala
K17199	RASEF, RAB45; Ras and EF-hand domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala
K26678	MON2; protein MON2	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.