Gene detail

Detailed information of g1100.t2 in Tripedalia maipoensis

Genomic Location: scaffold_1:53871927...53937661
NR annotation: no NCBI-NR hit recorded
Species abbreviation TMAIP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g1100.t2

ATGTCTATACCACAATTTATCGAGGATGCCAAGCAAGATCTCAGTTCACCGACCGTATCCGGGTTCCCAAGCAAGATTGGAAGCTACAAAAGTATGATAAGCAACCTTGACGAGCTTTTTGACTCTGACAAAAATGCCATCCACAAGTTCAAGAAAGCAGTGAAGGCAATGCACAATTCTGCTCAAGAACTTCTCAATAGTGAGGTAACCTATGCAGAGAACATGGAAAAACTGGGCTCCATTGCATTGTCAAGGGAAGCAGAGACTGGGGTTGGAACTGCCTTTCTCAAATTGTCTGTGATAACAAAGGAGCTGTGTAACATGAAGAAGAATCTGTGTGGGAACTTCAATAATATGGTACTTTTCCCCTTGGATTCACTGCTGAAGGGTGACATCAAATCGCTTGGGGAACTAAAGAAGCCCTTTGAAGAAGCATGGAAGGACTACAAAGCAAAAGGAACCAAAGTTGAAAAGGAAGCAAGGAAGAAGACAGGCGAAATTGTCCTTTATCGGATAGATCCTGAGAAAAATGACGAGACTGAAAAAGAAAGACGCATATGCATGTACCATATGAGTGAGTTCCTTGTTAAAGCAACAGAAGTCAAGTACAAAAAAGGCGTGGAACTGGTTCAACATCTGATCGAATATTATTATGCACAACTGCAGTACTTCCACCGTGGCATGGAGTTGTTGGAAAATATGAGAAGTTATTTCGAGGGTCTGACAGGCGAACTGCAGCAGATCAGAACAACTCAGGATGAAGAACGCAAAGAACTGATGGACCTCAAAAGCCAGCTGAGAACAAACCTACAAATTGACAAACTGGAGGCTCAGAAGATTGCCACATACAGTTTACATGGGCAGCAAGGTGACAAGGTTCACGGAACGGAGAAAAAAGGAATGCTTCATAAGAGAAGTGAAGGCGTTCGAAAACAATGGCAACGGCGCTATTGTGTCATCAGCAAGGGCCAGTTCACTCTTGCGCACAATCAGTCGAGTAATCCAACTGTAACGCTGAATTTGCTGACGTGTCAAGTAAAGCCATCTCCAGATCGAGACGCCCGGAAGTATAACTTCTCGTTAATAGCACATCAAAGAACATACCTTTTCCAAGCGGAAGACGAAGCTGAATTTGAGTCCTGGATATCCGTTCTGAGCAATGCACGCGAAGAAGCCCTTAAAATTGCATTCGGAGATGGCGAAGGATCTCTGGAGGGAGGTGATGGCAATTCGCAAATGGTACATAGTTTGAAAGAGCTGACACAGGGCATAGTTGAGGAAATAAAGAAAGTTCCCGGGAACAATATGTGCGTTGACTGTGGCTCTCCAGATCCAACGTGGTTTTCAACCAACCTCGGCATCTTAGTCTGCATCGAATGTTCTGGCATACATCGCGATATGGGTGTCCATGTATCCCGGATTCGGTCGCTTACATTGGACAGGCTAGGAACAGCGGAGCTTTTGCTTGCGAAAGCTGTCGGCAATGGCGGATTTAATGAGATAATGGAAGCAGAGTTAGATCAAGAATTAAAGCCGACAACTACAAGCACAATGGAAAAGAGAAAGGAATACATCCAAGCAAAATATATACAGAAAAAATACGTGCATAAGTCAGGAAATCCAGATCATGTTTTGCTACAGGATTTGTCAAACGTAATATCTAGTCGCGATATCCTGGCCTTGCTGCAGTTGTATGTAGATGGAGTGGACCTTACAGCATCTCTGCCAGACTCGAAAACTCGAGGCACGGCGTTGCATGAAGCTGTGGAACAAGAAGATTTAACATCCTTGCACATCATAGATTTTTTGGTGCAGAACAGTAACAATTTGGATGTTCAGAATGTAAATGGAGATACCGCGTTACACTTAGCTGCTCGACTTGGACAAACCGAATGTGCCAAACTTATCTTAAGGGGAGGGGCGACTTGTAATATCACTAACAAAGAGGGAAAAACACCTCTTCATATTGCAACAACCAAAGGTTACGAGGAATTAGTAGAGCTGTTAATCGAAGTAACGGATGGTAAGCTATCACGATGTGACAACGTGAAAATAGATTGGGGTATCAACCAGGCGGACGGCATTTATGAAAATCCTTTGGATCTCGTCGATTTAAAACTGGAGCTCAAGGACGAAAACAGTGATCTTAGCAATAAGTTGTCACCGAATTCTCCAGCTGGGATTGCTGTTTTGCCACTGCGGAGTGCATCGTGTAAGACACCGTCCACAGCAACTCCACTTGCTGGTCTGACTTCCACCCCTCTTGGTAGTCGAGATCGGCACAGTGTTGCTGTACCTTCTGGCGTCCAGGTGCTTCCATTACTTTCAGGTGAAAGGCCTATACTAAACAAAGTGTCGCACAATACCTCATCAGGAGCACCTCCTCCGCCACCAGCAAGGAAGAGCGTTAAGCAGCGAACACCTCCACATATCCCATTGTTGGATGCTACATCGCCAGTGTGCACACCCTCAAAGGCACTTGGAGAGATGCAGGCCCATACCCCTTTGACCAATGCAGAATCAGCACCGCTGACGTCATTCGGAAGTAAACAGCCTCCGCCAGCCGCTACCACGCCAGACAAGGGTCAAGATGAACCTCCACCTTTGCCGCCTCCAAGAGGAAGACCTAAGCTTGAAACTGTTAAGTCAGACCCAGAGGGTACATCTGAAGACAGCACAGAGGGTATTCCTGCATTACCCCAGAAGGAGCGGAGTCAGGAATCTCGACTTAAGTTTCGACGAGCCCGAGCTCTTTACGACTGCTCAGCCGATCATGAAGACGAGCTTTCGTTTAAAGAAGGCGAGATTATTATTGTGAGAAGTGAAGCTGACCCTGAGTGGCTGTTTGGTGAAGTCGAAGGAGAGCCAAAACGCAGAGGCGTGTTTCCTATCAATTTTGTCCATGTTTTGAATGACTGA

Transcript

g1100.t2

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan
PF01412 all species →	ArfGap	Putative GTPase activating protein for Arf	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF16746 all species →	BAR_3	BAR domain of APPL family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001164 all species →	Domain	Arf GTPase activating protein	Interproscan
IPR035836 all species →	Domain	ASAP1-like, SH3 domain	Interproscan
IPR037278 all species →	Homologous_superfamily	ARFGAP/RecO-like zinc finger	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR043593 all species →	Family	Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR038508 all species →	Homologous_superfamily	ArfGAP domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR004148 all species →	Domain	BAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45854 all species →	ASAP FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12488	ASAP; Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.