Gene detail

Detailed information of g11067.t1 in Acropora digitifera

Genomic Location: chr5Alt:11565895...11573865
NR annotation: XP_044175526.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114950001 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11067.t1

ATGAAGGCATTAGAGCAGGACAATTTTAATCTGAACCAAGTTCAATTGCTCGCTCTCAAGAGTCTCCCTGGTATCTCAGTGCTTGGTAGACGGAACTATTATGTCGATGAGTTTATTCTGTGTTGTTATGCTGACGAAGCTGCTACTGGAACGGTAAAATGTCACTCGCCAAAGGACGAATTTTCCAGCTGTTTTGATCTAATGAAAAACCGAGGTGTCCAAGTTTGCGTCTGGATTTTGGGACTGACAGCTCTTCTTGGTAATCTTATTGTTATATTAATGAGAGTAGTGGCCAAAGAAGACAACAAGGTACAATCTGTCCTACTGACAAACCTGGCGATCTCGGATCTACTGATGGGAATCTACCTGTTGATTATTGCAATCAAAGACGTGCAGTGGCAAGGGGAATATTTCCTACATGACTTTAAATGGAGATCCGGGGTACCATGCGCGCTTACTGGAGTTCTGTCGATGGTATCAAGTGAAGTTTCCGTGCTAATGTTAACCGTGTTAACTACAGATAGACTGATTTGCGTTGTTTTTCCGTTTAAAGTCAAAAGAATGAATCGTTCAGTTGCCCTCGTAGTTGTTGGAGGAGTCTGGGTCTTGGGAACAATGCTAGCAGTTATTCCAATCCTTGGGTTGGAATACTTTTACGACAAGAAGCGCAGTGTTGGTTTCTATGGAAAATCAGCAGTTTGTCTTCCTCTTCAGCTGTCGGAGGACAGGATGGCTGGATGGGAATATGCTGCTGGTATTTTTATTGGGCTAAACTTTGTTTCGTTTGTTTACATTCTTGTTGCTTATATTGTCATGTTCATTACAGTCAAAAACACGTCAAAGAAGGTTACGTCAAGAAGTATGAAAAGAGAATCGCAAATGGCCAGGCGCATGATGTTCATTATCCTGACTGATTTCTTGTGTTGGATGCCTGTTATTCTGATCGGACTCTTGTCGGTTCTTGGAAAGTTTCATGATCCAGAGAAAGAAGCTTACATTTGGATTGCCGTGTTTGTCCTTCCAGTCAACTCGTCAATTAATCCCATTCTTTACACATTCTCGACTCCAAATATCAGGAGGAGAGTTGGTCAGATGAAAAATTCGCTGTTCAACTTCATAGCTAGGAAGCTGAGACGCTCGAAAGTAGAAAACGCTTCAAGAGAAGCCACGATATCCATGTTTGGGAGAAACATCGTTGCCCCGAGTGTTTTCAGCACAGATCTTCCGAGTTTAGCTTCACGTTCCTATAACCACAGGTCGAGGCACAACCCAGGGACATCATCGAAGGCATTACATGAGGTGCAGGAATGTGGAGTTCCTCAGAAAGGCTTAAAGATTATAAACACTTCAAGCATATTACCCGAGGAAACTTCAAACTTAGTGGGTTTTGTGGTTGCGTGTCGTGAAAATGGAAAAGAAAATGCTATGAGATTGATCAAACATTTTTCGAGTGAATGCAAAGATGATTGGAAAATGGAGTCTGACCTTGTTAATGAACTTGGAGAAGCAGAGCACCCTAACATCCTGACATACTGTTGGCACGGTGAAGCTCAAGAGTGTGACCTGAATTTCAAGCAAACGCTGTTTCCACGACTCGCGAAAAGTGCCTTCTTACTGTGTTACGAATTCCCTGAGAGCACGCCACTGGACGAATATTTGAAAAACAAAAAGGTCGTTCTTAACTTGGACACTCTTTTTGTTGTGGCCATGGATTTGATCGATGCCATACGTTGCCTGGAAAACAGAGGCATCGTGCACAACAACATAACAATGTCCACTGTGCTGATAGCAGAAGGATTTAGGGTACCACCAGTGAAAGCCATCTTGGCTGGTTTCGGCTCAAGTCAGTTCGTTTCTCGGGATTTCCCTGATTGCAAGGAAATAGGTCGCAACAAGAAGGACATTTTGGGGAAGAACATTGTGCAGTTCGGTTGTGTGCTGTCTGAATTGATGACAAGTTGCAACAATTCCCGAGAATGTGATGAGCTTGAAGGAATTGTGCATCTGTGCTCTGAGCAGGACACGGATGTTCGACCAAGTGCTTCTCAAATTGGGGACTTGCTGAGAGACCTGTGGCACCAAAATGACATCTGGGATACATCAGTGTAA

Transcript

chr5Alt.g11067.t1

CTCAGTTTGGCCAAATTCAGTCATTTGAGAATGACTAGAAAAGATACTTTTATTTTCACGCCTAATACTTTGACAATTTCGATGAAGGCATTAGAGCAGGACAATTTTAATCTGAACCAAGTTCAATTGCTCGCTCTCAAGAGTCTCCCTGGTATCTCAGTGCTTGGTAGACGGAACTATTATGTCGATGAGTTTATTCTGTGTTGTTATGCTGACGAAGCTGCTACTGGAACGGTAAAATGTCACTCGCCAAAGGACGAATTTTCCAGCTGTTTTGATCTAATGAAAAACCGAGGTGTCCAAGTTTGCGTCTGGATTTTGGGACTGACAGCTCTTCTTGGTAATCTTATTGTTATATTAATGAGAGTAGTGGCCAAAGAAGACAACAAGGTACAATCTGTCCTACTGACAAACCTGGCGATCTCGGATCTACTGATGGGAATCTACCTGTTGATTATTGCAATCAAAGACGTGCAGTGGCAAGGGGAATATTTCCTACATGACTTTAAATGGAGATCCGGGGTACCATGCGCGCTTACTGGAGTTCTGTCGATGGTATCAAGTGAAGTTTCCGTGCTAATGTTAACCGTGTTAACTACAGATAGACTGATTTGCGTTGTTTTTCCGTTTAAAGTCAAAAGAATGAATCGTTCAGTTGCCCTCGTAGTTGTTGGAGGAGTCTGGGTCTTGGGAACAATGCTAGCAGTTATTCCAATCCTTGGGTTGGAATACTTTTACGACAAGAAGCGCAGTGTTGGTTTCTATGGAAAATCAGCAGTTTGTCTTCCTCTTCAGCTGTCGGAGGACAGGATGGCTGGATGGGAATATGCTGCTGGTATTTTTATTGGGCTAAACTTTGTTTCGTTTGTTTACATTCTTGTTGCTTATATTGTCATGTTCATTACAGTCAAAAACACGTCAAAGAAGGTTACGTCAAGAAGTATGAAAAGAGAATCGCAAATGGCCAGGCGCATGATGTTCATTATCCTGACTGATTTCTTGTGTTGGATGCCTGTTATTCTGATCGGACTCTTGTCGGTTCTTGGAAAGTTTCATGATCCAGAGAAAGAAGCTTACATTTGGATTGCCGTGTTTGTCCTTCCAGTCAACTCGTCAATTAATCCCATTCTTTACACATTCTCGACTCCAAATATCAGGAGGAGAGTTGGTCAGATGAAAAATTCGCTGTTCAACTTCATAGCTAGGAAGCTGAGACGCTCGAAAGTAGAAAACGCTTCAAGAGAAGCCACGATATCCATGTTTGGGAGAAACATCGTTGCCCCGAGTGTTTTCAGCACAGATCTTCCGAGTTTAGCTTCACGTTCCTATAACCACAGGTCGAGGCACAACCCAGGGACATCATCGAAGGCATTACATGAGGTGCAGGAATGTGGAGTTCCTCAGAAAGGCTTAAAGATTATAAACACTTCAAGCATATTACCCGAGGAAACTTCAAACTTAGTGGGTTTTGTGGTTGCGTGTCGTGAAAATGGAAAAGAAAATGCTATGAGATTGATCAAACATTTTTCGAGTGAATGCAAAGATGATTGGAAAATGGAGTCTGACCTTGTTAATGAACTTGGAGAAGCAGAGCACCCTAACATCCTGACATACTGTTGGCACGGTGAAGCTCAAGAGTGTGACCTGAATTTCAAGCAAACGCTGTTTCCACGACTCGCGAAAAGTGCCTTCTTACTGTGTTACGAATTCCCTGAGAGCACGCCACTGGACGAATATTTGAAAAACAAAAAGGTCGTTCTTAACTTGGACACTCTTTTTGTTGTGGCCATGGATTTGATCGATGCCATACGTTGCCTGGAAAACAGAGGCATCGTGCACAACAACATAACAATGTCCACTGTGCTGATAGCAGAAGGATTTAGGGTACCACCAGTGAAAGCCATCTTGGCTGGTTTCGGCTCAAGTCAGTTCGTTTCTCGGGATTTCCCTGATTGCAAGGAAATAGGTCGCAACAAGAAGGACATTTTGGGGAAGAACATTGTGCAGTTCGGTTGTGTGCTGTCTGAATTGATGACAAGTTGCAACAATTCCCGAGAATGTGATGAGCTTGAAGGAATTGTGCATCTGTGCTCTGAGCAGGACACGGATGTTCGACCAAGTGCTTCTCAAATTGGGGACTTGCTGAGAGACCTGTGGCACCAAAATGACATCTGGGATACATCAGTGTAAACTATTGACGGAATGTCTTTTGCAAGTAATACAAACTCAACAACAAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46023	G-protein coupled receptor GRL101 OS=Lymnaea stagnalis OX=6523 PE=2 SV=1
Q8WXD0	Relaxin receptor 2 OS=Homo sapiens OX=9606 GN=RXFP2 PE=1 SV=1
Q91ZZ5	Relaxin receptor 2 OS=Mus musculus OX=10090 GN=Rxfp2 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24372 all species →	GLYCOPROTEIN HORMONE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007190 all species →	Biological Process	activation of adenylate cyclase activity	Interproscan
GO:0008528 all species →	Molecular Function	G protein-coupled peptide receptor activity	Interproscan
GO:0009755 all species →	Biological Process	hormone-mediated signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g11067.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.