Gene detail

Detailed information of g11069.t1 in Tripedalia maipoensis

Genomic Location: scaffold_8:13250424...13275549
NR annotation: no NCBI-NR hit recorded
Species abbreviation TMAIP · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15926 all species →	RNF220	E3 ubiquitin-protein ligase RNF220	Family	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR052443 all species →	Family	E3 ubiquitin-protein ligase RNF220-like	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR031824 all species →	Domain	E3 ubiquitin-protein ligase RNF220, middle domain	Interproscan
IPR040178 all species →	Domain	E3 ubiquitin-protein ligase RNF220, RING finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13459 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25174	RNF220; E3 ubiquitin-protein ligase RNF220	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.