Gene detail

Detailed information of g11150.t1 in Montipora capitata

Genomic Location: Sc0000326:228754...258178
NR annotation: XP_044175771.1, F-actin-uncapping protein LRRC16A-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11150.t1

atgctgacaacagttaccgggaaaagcagagaagcagttgttccaccatcgtttcagcagttcttcagtagttcacaggctctaaaactgttggatgtatcagactgtaaactctatgctgaagctgtcagagcaatcttgaaaggcttaaatgagaacaatattctttgtgatattgatcttaacatcagcaacaatgagcttagagcttcaggagctacagccattgctgagcacgtgggcaaactcagatgcgtcagtagactggacatcagtgataatggttttgaaggggatttagtccagatccttgagaaaatggcttcaaacaagtccatgaaacacttgaatctggggcagaacacgagacactccaagagttcagctgctgttatggaagcgctagttcagctgatatcgggggaaaattcgcatctagagtccatatccttggctgagtccaaattgaaagaggacattgtccctcttctagatgctctgggtactaatgaaagtgtgaaagaactcgacatatgtgggaatcacatgggtgatgaaggagctcgcattttagcaaaggctcttcaaatcaacagtaaactaagaactctcaactgggacaagaacggtacatcatacagagggtttgcagacatcgctgctgctctggaatgcaaccacacccttctatcgatgcctatacctctccatgatgcagcacagtcacttaaacctcaaacagaacagcacctaaaaaagattgagaagttgttactcagaaatcagtctcctcacaaaattgtgacagagcaggcgtacagattacagcagggtctctttctcgcgtccactcagcaacagatggtggaccgtctcgtggttcaattgcaagacctcatcagcgagctccgactttccaaggacactgatactcagaacgagatcaaggcagctaaaaattatgttcaggatgctgacaagcttaaacagcttttgttaaagttccatctgtgtacgaatgacagtgatctggagccgcgttttgctgaacttgctaccgaatttcataaagctgcagaggaaaaaatgaagagcaacttggacaagatggtggattgtgcaaaagaagtctgtccttacatcacatcgacacaagatgtaaaaagccgcctggaagcagttgtacagaacacgccccagttgagtgaaacgttcgtagaggaactgatcctcacgcaagccgctgctggaatcgccaacagattaagcgaagacaaacttggcgtggcgtctgtaatggtggacactatcatggaaattgtgattcatcagctggagagttgtatttctaaactggatttgcttctgaaagatcatcgaaacaacttggatgaaggagaaaatgaagccgaaaagagtttagaggaggacgatgtggcagcggttgctcgtaaagcgcgtaatcgccttagcgtatctcagttggcggtacccgtgacagaaggaagtgatgcaaccccgaggaaccacaggagacgccctacagtcagcaggcggccaactcatggcagagtatcggaagatgaagagaaagaaaaagaggacacaggagagatcaaactgctgaaggatgatatagatgggaaggcagcacagcaacaggggatcaaatcagatttatcagatctctccgtcgtagaacccaaagcttctgaactgaagcatttgggtaaggaccgtccacggcccccacagaaaaggcgcttacctacccgtccctcaagcaagccggttgtcgctaatggctccagcaatgaagacgcgaaggaagaacaagaagatataaacttgttttggactacaacagttgaatcagcgcctattgaggttgccccatccaggaaaaagtcatcaacctcgaagcctcctacacaccctaccggcaaaactccaccgcccaaacccgcgccaaaaccaaaaccgtcaccaagatcaaaggacactgaacttcacgaatcaaacactcgaaacaaaatgtgtttaactgtatcttactttatcctgaacaggaaaacagaaagtctgtctggaaagggcgaaaagaagacgaaatcggtgtcaccaaagttaggtcggtccagagcttcaactgaaaaaatatcggaggttaaaaaggccaaaccagaccgggcgcattctgtaaagaaactagatgcgcctacggaaagcgttccctccgacaagtcaccggaagtttcgaaagagacgaccccctcggaaaagaacgagagcccgttgaaagagagggtgccatcggcaaagaaacctgaagtgtccacggagaaggctcctgcagaaaagacagcggaggagtccaatgataaggtttcctctgagaacaaacccgaagatacgtcaactgataaaaaaccggacgtgacaccaactgagaaacaacccgcgatatcgagggacagaaagccctccgacaaaaaaacggaagtggaacgaccgctcatcatgggtgtaaagccgtttgcggttcctcgtgaaaagccctctacggatagtggcctactcgctggggcccctctacctcgtgacagggcagctacaggtgacaagactacaaagcctagccctgaagaacctgcgacccatccggcgaccgctagaaaaccgccgaaatttggaattgggataggcggtgcggcgggtggaggacttttggcagagatgaagctgaggcaggaaaaggcggggagctttggaaggaaaaatgttcccggaaagccagtcgacaccaagccagcagacgaaaccaacgccgggaagaagaataatggatcggaagtgaccaaggagaagcttgtcaaaccatcatcattcaagagaccaaggttaccgtccggtaccccgccgaagcccgcaccaagaccgccgagaaaagaatccccaaaacaggagagagagaaagataaagacgaaaaggaggttaaacagaaagaggaacaaaaaaaggcgggcgtgacggatcaaccgggtggaaagcaaccggaaacggaagttcctgaaaagcaaccggataagaaagaaccaactccggaagtgaaaagggaggcagagcaagccaaggaagagaacacaaaagaaacagagggtacaagcgaaaaagcgacgggtgataaagaagaatcaaagtccacagctgcagttgaagaaaaggaaaagttgactcacgaggcaaagacgtttgaacaggaaagtctaaagggtacaacgacgcaggaaagtgaagttccaaataaaacggtagaaaagaatgacaagcagaagatcgtggaaccggccgacaagacgaagcaagtggagtcgttggacgatttgtgggtaacacaaaagctaggtagcaatgctgtcagacctggcggtcgatccaactcgctcaaggttcaaagaagcacatcaaccgagaaatccacatcgactgtacggtcagccaccctgccgaagccatggtctccaggacaggttccttccagtatgctgtcaagaaaacttagctgggaactgccaaaggtcggtgtcgaagatccgtttaaggaaaagaaggagcgaagtgatagtcgaggggaggagaccatccaggaagattctgaggagcagaacgtcaaaacacctccttcaagtcccaaagagaaaagcaaggaagaagaaaaaaatgagaacgaaaacgaagccgaagacccaaaaacgaatagtcatcgtcgcagtcttacgttggaagaaatcctatctgctgatggtgataccaccttatag

Transcript

g11150.t1

ATGCTGACAACAGTTACCGGGAAAAGCAGAGAAGCAGTTGTTCCACCATCGTTTCAGCAGtTCTTCAGTAGTTCACAGGCTCTAAAACTGTTGGATGTATCAGACTGTAAACTCTATGCTGAAGCTGTCAGagCAATCTTGAAAGGCTTAAATGAGAACAATATTCTTTGTGATATTGATCTTAACATCAGCAACAATGAGCTTAGAGCTTCAGGAGCTACAGCCATTGCTGAGCACGTGGGCAAACTCAGATGCGTCAGTAGACTGGACATCAGTGATAATGGTTTTGAAGGGGATTTAGTCCAGATCCTTGAGAAAATGGCTTCAAACAAGTCCATGAAACACTTGAATCTGGGGCAGAACACGAGACACTCCAAgAGTTCAGCTGCTGTTATGGAAGCGCTAGTTCAGCTGATATCGGGGGAAAATTCGCATCTAGAGTCCATATCCTTGGCTGAGTCCAAATTGAAAGAGGACATTGTCCCTCTTCTAGATGCTCTGGGTACTAATGAAAGTGTGAAAGAACTCGACATATGTGGGAATCACATGGGTGATGAAGGAGCTCGCATTTTAGCAAAGGCTCTTCAAATCAACAGTAAACTAAGAACTCTCAACTGGGACAAGAACGGTACATCATACAGAGGGTTTGCAGACATCGCTGCTGCTCTGGAATGCAACCACACCCTTCTATCGATGCCTATACCTCTCCATGATGCAGCACAGTCACTTAAACCTCAAACAGAACAGCACCTAAAAAAGattgAGAAGTTGTTACTCAGAAATCAGTCTCCTCACAAAATTGTGACAGAGCAGGCGTACAGATTACAGCAGGGTCTCTTTCTCGCGTCCACTCAGCAACAGATGGTGGACCGTCTCGTGGTTCAATTGCAAGACCTCATCAGCGAGCTCCGACTTTCCAAGGACACTGATACTCAGAACGAGATCAAGGCAGCTAAAAATTATGTTCAGGATGCTGACAAGCTTAAACAGcttttgttAAAGTTCCATCTGTGTACGAATGACAGTGATCTGGAGCCGCGTTTTGCTGAACTTGCTACCGAATTTCATAAAGCTGCAGAGGAAAAAATGAagAGCAACTTGGACAAGATGGTGGATTGTGCAAAAGAAGTCTGTCCTTACATCACATCGACACAAGATGTAAAAAGCCGCCTGGAAGCAGTTGTACAGAACACGCCCCAGTTGAGTGAAACGTTCGTAGAGGAACTGATCCTCACGCAAGCCGCTGCTGGAATCGCCAACAGATTAAGCGAAGACAAACTTGGCGTGGCGTCTGTAATGGTGGACACTATCATGGAAATTGTGATTCATCAGCTGGAGAGTTGTATTTCTAAACTGGATTTGCTTCTGAAAGATCATCGAAACAACTTGGATGAAGGagaaaatgaagccgaaaagAGTTTAGAGGAGGACGATGTGGCAGCGGTTGCTCGTAAAGCGCGTAATCGCCTTAGCGTATCTCAGTTGGCGGTACCCGTGACAGAAGGAAGTGATGCAACCCCGAGGAACCACAGGAGACGCCCTACAGTCAGCAGGCGGCCAACTCATGGCAGAGTATCGGAAGatgaagagaaagaaaaagaggacaCAGGAGAGATCAAACTGCTGAAGGATGATATAGATGGGAAGGCAGCACAGCAACAGGGGATCAAATCAGATTTATCAGATCTCTCCGTCGTAGAACCCAAAGCTTCTGAACTGAAGCATTTGGGTAAGGACCGTCCACGGCCCCCACAGAAAAGGCGCTTACCTACCCGTCCCTCAAGCAAGCCGGTTGTCGCTAATGGCTCCAGCAATGAAGACGCGAAGGAAGAACAAGAAGATATAAACTTGTTTTGGACTACAACAGTTGAATCagCGCCTATTGAGGTTGCCCCATCCAGGAAAAAGTCATCAACCTCGAAGCCTCCTACACACCCTACCGGCAAAACTCCACCGCCCAAACCCGCGCCAAAACCAAAACCGTCACCAAGATCAAAGGACACTGAACTTCACGAATCAAACACTCGAAACAAAATGTGTTTAACTGTATCTTACTTTATCCTGAACAGGAAAACAGAAAGTCTGTCTGGAAAGGGCGAAAAGAAGACGAAATCGGTGTCACCAAAGTTAGGTCGGTCCAGAGCTTCAACTGAAAAAATATCGGAGGTTAAAAAGGCCAAACCAGACCGGGCGCATTCTGTAAAGAAACTAGATGCGCCTACGGAAAGCGTTCCCTCCGACAAGTCACCGGAAGTTTCGAAAGAGACGACCCCCTCGGAAAAGAACGAGAGCCCGTTGAAAGAGAGGGTGCCATCGGCAAAGAAACCTGAAGTGTCCACGGAGAAGGCTCCTGCAGAAAAGACAGCGGAGGAGTCCAATGATAAGGTTTCCTCTGAGAACAAACCCGAAGATACGTCAACTGATAAAAAACCGGACGTGACACCAACTGAGAAACAACCCGCGATATCGAGGGACAGAAAGCCCTCCGACAAAAAAACGGAAGTGGAACGACCGCTCATCATGGGTGTAAAGCCGTTTGCGGTTCCTCGTGAAAAGCCCTCTACGGATAGTGGCCTACTCGCTGGGGCCCCTCTACCTCGTGACAGGGCAGCTACAGGTGACAAGACTACAAAGCCTAGCCCTGAAGAACCTGCGACCCATCCGGCGACCGCTAGAAAACCGCCGAAATTTGGAATTGGGATAGGCGGTGCGGCGGGTGGAGGACTTTTGGCAGAGATGAAGCTGAGGCAGGAAAAGGCGGGGAGCTTTGGAAGGAAAAATGTTCCCGGAAAGCCAGTCGACACCAAGCCAGCAGACGAAACCAACGCCGGGAAGAAGAATAATGGATCGGAAGTGACCAAGGAGAAGCTTGTCAAACCATCATCATTCAAGAGACCAAGGTTACCGTCCGGTACCCCGCCGAAGCCCGCACCAAGACCGCCGAGAAAAGAATCCCCAAAACAGGAGAGAGAGAAAGATAAAGACGAAAAGGAGGTTAAACAGAAAGAGGAACAAAAAAAGGCGGGCGTGACGGATCAACCGGGTGGAAAGCAACCGGAAACGGAAGTTCCTGAAAAGCAACCGGATAAGAAAGAACCAACTCCGGAAGTGAAAAGGGAGGCAGAGCAAGCCAAGGAAGAGAACACAAAAGAAACAGAGGGTACAAGCGAAAAAGCGACGGGTGATAAAGAAGAATCAAAGTCCACAGCTGCAgttgaagaaaaggaaaagttgaCTCACGAGGCAAAGACGTTTGAACAGGAAAGTCTAAAGGGTACAACGACGCAGGAAAGTGAAGTTCCAAATAAAACGGTAGAAAAGAATGACAAGCAGAAGATCGTGGAACCGGCCGACAAGACGAAGCAAGTGGAGTCGTTGGACGATTTGTGGGTAACACAAAAGCTAGGTAGCAATGCTGTCAGACCTGGCGGTCGATCCAACTCGCTCAAGGTTCAAAGAAGCACATCAACCGAGAAATCCACATCGACTGTACGGTCAGCCACCCTGCCGAAGCCATGGTCTCCAGGACAGGTTCCTTCCAGTATGCTGTCAAGAAAACTTAGCTGGGAACTGCCAAAGGTCGGTGTCGAAGATCCGTTTAAGGAAAAGAAGGAGCGAAGTGATAGTCGAGGGGAGGAGACCATCCAGGAAGATTCTGAGGAGCAGAACGTCAAAACACCTCCTTCAAGTCCCAAAGAGAAAAGcaaggaagaagaaaaaaatgagaACGAAAACGAAGCcgaagacccaaaaacgaaTAGTCATCGTCGCAGTCTTACGTTGGAAGAAATCCTATCTGCTGATGGTGATACCACCTTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5VZK9	F-actin-uncapping protein LRRC16A OS=Homo sapiens OX=9606 GN=CARMIL1 PE=1 SV=1
Q6EDY6	F-actin-uncapping protein LRRC16A OS=Mus musculus OX=10090 GN=Carmil1 PE=1 SV=2
Q8ND23	Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Homo sapiens OX=9606 GN=CARMIL3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003741 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16000 all species →	CARMIL_C	CARMIL C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR051279 all species →	Family	Protein Phosphatase 1 Regulatory and Actin Interaction Protein	Interproscan
IPR031943 all species →	Domain	CARMIL, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24112 all species →	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030027 all species →	Cellular Component	lamellipodium	Interproscan
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20493	LRRC16, CARMIL; leucine-rich repeat-containing protein 16	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11150.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

41.7Max TPM

16.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	15.83	41.71
whole organisms · low pH treatment	15	15	16.30	28.53
whole organisms · extra low pH treatment pH treatment	12	12	17.36	36.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	41.71
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	36.36
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	34.55
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	22.87
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	21.84
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	20.06
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	17.34
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	15.89
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	15.67
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	14.76
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	13.33
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	12.31
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	11.67
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	10.87
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	7.43
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	6.93
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	6.90
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	6.55
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	6.44
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	5.57
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	3.48
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	28.53
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	26.28
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	25.49
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	23.21
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	22.84
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	18.28
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	15.90
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	14.49
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	14.21
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	13.37
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	12.11
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	9.35
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	7.39
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	7.11
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	5.96
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	36.54
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	33.83
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	26.15
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	20.69
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	17.18
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	16.32
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	15.98
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	12.39
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	9.75
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	8.34
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	6.53
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	4.63

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.