Gene detail

Detailed information of g11158.t1 in Montipora capitata

Genomic Location: Sc0000327:19613...29778
NR annotation: XP_029205991.1, FHIP family protein v1g243165-like [Acropora millepora]
Species Montipora capitata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11158.t1

atgagcttactaaagaaacttgcatctttgtcccctctgcaatccccgcatgctgaagcggaaaaaaggcaacttggtgacggttttgcggagttaggtaactcggacaacctgcgacttgtagatgttcactggaataatgcaaaggcgattatggctttggacgagaagactgttggacatcaagaacggtgtaacattttagtttatcatttaaatgaaattgtatccgttttggtcgatgaaaaagacggagacccgggaccatgtttacaatatgttctcgacgaagatgtgtttcaaaatgtctacacttggagcgcaacaaataagaattgcgtgaaagacatgaagcgtgaacaactggtattatttagaagccttatagaaaaggccagagcacatttgctgatatatgaacaagtctggaaacccttgctttatcttttggactcgtgtataaacaaaatatcgcccgatatggaggaacattttgtggctgtgttaaagggtctttgcgtgagcgttaatcgagatattgcgcttctagacttattcttcttggataatcaccaccacggtcgaattgccaaaatgtctgtgttttctctgctgattccattcgtccatcgtgaaggaaatgttggaaattgggctcgagacgcgatgctgttatgcatggctttatcatccgttgatgccagattaggaacgtacattgctgaagaaacggacttttgccccgtcttagcgactgggctcagtggtctgttctctgatttgccaacttcacttgacatcccttcagaggactggtattctctggaaagaggattgtgggcaacatttcctgaactggtgtcatttttaagatctcttgagttctgcaataatgtcatacagattgctcatacccaagttcagagcaaactgttggatcttatttaccatggatttctggtctcagttatggcagcgtcacttagccagactacagatgaagccttgatagcagctactgcctacctagacctgtttttgcgcagcatcactgatgctaatctgatgaaagttttcttgaagtttattatggttgagagatccgatggggtaccaattctagaattgttggtgtctaggattgcacaggaatctcagctcgctgttgtatccttgggtttgttttacactctcctggacctgaattgtgaagacattatgtatagtttggtgttaaagtacctcattccatgtacccatatcctcagtagccaaaagcgaactatcaaggaagtagatttttacagcaagagtgctttcaaatttttgtctcttatccctgcttgctgcgacagtagtccatcatcgtcgccttcgtggtcaacagaaaaccaggacacgaatccgaggaagtcgccaatgacgatagacgtaaagacaagcgagcttgtgttctacagatcgacgcaactcgactatctttactccgaggtatgcattgattacatggaatacttagcagatgcgcggaattcgattcgtgattgccaagttagatgcgtttgctggtgtgcaccttacgatggtcaaatgccatcccctcaggaacccctgttggtcgcgcggcatcggtctgcctcgaacacgcccgcaccggttgccaatggcatcattccaaatcaggatcagtcagcatcactaggtgacacgcacattccgttaaaacgatccaagtcggtcactgaacacgaacagaagccgagccagccagacctggggttgtttttaacaacgttatttcagaagttggaacagatgccacagaattcattttacgtgaacctaattttaaccggggtggtctcgaggcttgcgttgtaccctcagccgcttctccgctcgtttctcttgaattacaacatggttttgaagcccggtgtccgatcactgttccagatccttagttccgtcaaaattaaagtggaaaacatagcagaacaaacagaggggctcgaccgtcttcttcatcgcgccaggaaaaatcttattcttcgcgaggaaaagagccgtgcgagtattcaaagtgtggtcatcgacattcaacagcctgtgaaggtggctaaacatcctgaatcacgaagcccagtagcgattcgcaagatctcgagacaaagaacagactcctcgttattaagtcgcgcgcggtttttacaagacggaccaccgccgaaaagcttcggcagcaaaggcagtcttagcttccgaaaacaatccgttgatccccctggaaattcgccagaacgtaaggcgagtgttgagaggcgtggaagcgccagtacaagctctagtctttcactgagcgagtcgtgggagagtttaacgtcgttgtatccggactctggaagcgcgacggacataaacgcggataactttcccaagcccggaaccgtgcgcaagctttccatccctgtaaagttcgggcagaattcacggaaaaattcgtttgtcaagaactcgtttcgaaggaaaaacccgaaaactgtcaagaacgccgtgtattgtattgtggtattggaagagtggcttaaagaactggccgccatttcacaggagcacgctttgttgcttggcaacggagacgaacatccggttacgacgtga

Transcript

g11158.t1

ATGAGCTTACTAAAGAAACTTGCATCTTTGTCCCCTCTGCAATCCCCGCATGCTGAAGCGGAAAAAAGGCAACTTGGTGACGGTTTTGCGGAGTTAGGTAACTCGGACAACCTGCGACTTGTAGATGTTCACTGGAATAATGCAAAGGCGATTATGGCTTTGGACGAGAAGACTGTTGGACATCAAGAACGGTGTAACATTTTAGTTTATCATTTAAATGAAATTGTATCCGTTTTGGTCGATGAAAAAGACGGAGACCCGGGACCATGTTTACAATATGTTCTCGACGAAGATGTGTTTCAAAATGTCTACACTTGGAGCGCAACAAATAAGAATTGCGTGAAAGACATGAAGCGTGAACAACTGGTATTATTTAGAAGCCTTATAGAAAAGGCCAGAGCACATTTGCTGATATATGAACAAGTCTGGAAACCCTTGCTTTATCTTTTGGACTCGTGTATAAACAAAATATCGCCCGATATGGAGGAACATTTTGTGGCTGTGTTAAAGGGTCTTTGCGTGAGCGTTAATCGAGATATTGCGCTTCTAGACTTATTCTTCTTGGATAATCACCACCACGGTCGAATTGCCAAAATGTCTGTGTTTTCTCTGCTGATTCCATTCGTCCATCGTGAAGGAAATGTTGGAAATTGGGCTCGAGACGCGATGCTGTTATGCATGGCTTTATCATCCGTTGATGCCAGATTAGGAACGTACATTGCTGAAGAAACGGACTTTTGCCCCGTCTTAGCGACTGGGCTCAGTGGTCTGTTCTCTGATTTGCCAACTTCACTTGACATCCCTTCAGAGGACTGGTATTCTCTGGAAAGAGGATTGTGGGCAACATTTCCTGAACTGGTGTCATTTTTAAGATCTCTTGAGTTCTGCAATAATGTCATACAGATTGCTCATACCCAAGTTCAGAGCAAACTGTTGGATCTTATTTACCATGGATTTCTGGTCTCAGTTATGGCAGCGTCACTTAGCCAGACTACAGATGAAGCCTTGATAGCAGCTACTGCCTACCTAGACCTGTTTTTGCGCAGCATCACTGATGCTAATCTGATGAAAGTTTTCTTGAAGTTTATTATGGTTGAGAGATCCGATGGGGTACCAATTCTAGAATTGTTGGTGTCTAGGATTGCACAGGAATCTCAGCTCGCTGTTGTATCCTTGGGTTTGTTTTACACTCTCCTGGACCTGAATTGTGAAGACATTATGTATAGTTTGGTGTTAAAGTACCTCATTCCATGTACCCATATCCTCAGTAGCCAAAAGCGAACTATCAAGGAAGTAGATTTTTACAGCAAGagtgctttcaaatttttgtcTCTTATCCCTGCTTGCTGCGACAGTAGTCCATCATCGTCGCCTTCGTGGTCAACAGAAAACCAGGACACGAATCCGAGGAAGTCGCCAATGACGATAGACGTAAAGACAAGCGAGCTTGTGTTCTACAGATCGACGCAACTCGACTATCTTTACTCCGAGGTATGCATTGATTACATGGAATACTTAGCAGATGCGCGGAATTCGATTCGTGATTGCCAAGTTAGATGCGTTTGCTGGTGTGCACCTTACGATGGTCAAATGCCATCCCCTCAGGAACCCCTGTTGGTCGCGCGGCATCGGTCTGCCTCGAACACGCCCGCACCGGTTGCCAATGGCATCATTCCAAATCAGGATCAGTCAGCATCACTAGGTGACACGCACATTCCGTTAAAACGATCCAAGTCGGTCACTGAACACGAACAGAAGCCGAGCCAGCCAGACCTGGGGTTGTTTTTAACAACGTTATTTCAGAAGTTGGAACAGATGCCACAGAATTCATTTTACGTGAACCTAATTTTAACCGGGGTGGTCTCGAGGCTTGCGTTGTACCCTCAGCCGCTTCTCCGCTCGTTTCTCTTGAATTACAACATGGTTTTGAAGCCCGGTGTCCGATCACTGTTCCAGATCCTTAGTTCCGTCAAAATTAAAGTGGAAAACATAGCAGAACAAACAGAGGGGCTCGACCGTCTTCTTCATCGCGCCAGGAAAAATCTTATTCTTCGCGAGGAAAAGAGCCGTGCGAGTATTCAAAGTGTGGTCATCGACATTCAACAGCCTGTGAAGGTGGCTAAACATCCTGAATCACGAAGCCCAGTAGCGATTCGCAAGATCTCGAGACAAAGAACAGACTCCTCGTTATTAAGTCGCGCGCGGTTTTTACAAGACGGACCACCGCCGAAAAGCTTCGGCAGCAAAGGCAGTCTTAGCTTCCGAAAACAATCCGTTGATCCCCCTGGAAATTCGCCAGAACGTAAGGCGAGTGTTGAGAGGCGTGGAAGCGCCAGTACAAGCTCTAGTCTTTCACTGAGCGAGTCGTGGGAGAGTTTAACGTCGTTGTATCCGGACTCTGGAAGCGCGACGGACATAAACGCGGATAACTTTCCCAAGCCCGGAACCGTGCGCAAGCTTTCCATCCCTGTAAAGTTCGGGCAGAATTCACGGAAAAATTCGTTTGTCAAGAACTCGTTTCGAAGGAAAAACCCGAAAACTGTCAAGAACGCCGTGTATTGTATTGTGGTATTGGAAGAGTGGCTTAAAGAACTGGCCGCCATTTCACAGGAGCACGCTTTGTTGCTTGGCAACGGAGACGAACATCCGGTTACGACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S6A1	FHIP family protein v1g243165 OS=Nematostella vectensis OX=45351 GN=v1g243165 PE=3 SV=1
A7YY62	FHF complex subunit HOOK-interacting protein 1B OS=Bos taurus OX=9913 GN=FHIP1B PE=2 SV=1
Q8N612	FHF complex subunit HOOK-interacting protein 1B OS=Homo sapiens OX=9606 GN=FHIP1B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007621 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19314 all species →	DUF5917	Family of unknown function (DUF5917)	Family	Interproscan
PF19311 all species →	KELAA	KELAA motif	Motif	Interproscan
PF10257 all species →	RAI16-like	Retinoic acid induced 16-like protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019384 all species →	Family	FHF complex subunit HOOK interacting protein	Interproscan
IPR045669 all species →	Domain	FHF complex subunit HOOK-interacting protein, C-terminal	Interproscan
IPR045668 all species →	Conserved_site	FHF complex subunit HOOK-interacting protein, KELAA motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21705 all species →	RAI16 PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for g11158.t1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26420	FHIP1, FAM160A; FHF complex subunit HOOK interacting protein 1	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11158.t1 across 48 RNA-seq samples of Montipora capitata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

3Conditions

45.8Max TPM

20.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organisms · ambient pH treatment	21	21	20.16	36.66
whole organisms · low pH treatment	15	15	22.09	45.79
whole organisms · extra low pH treatment pH treatment	12	12	20.14	39.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11452252	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	36.66
SRR11452250	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	36.47
SRR11452246	whole organisms · ambient pH treatment	whole organisms	prawn chip	ambient pH treatment	SRP254626	36.24
SRR11452259	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	32.14
SRR11452263	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	28.04
SRR11452254	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	26.47
SRR11452260	whole organisms · ambient pH treatment	whole organisms	cleavage	ambient pH treatment	SRP254626	22.73
SRR11452262	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	22.67
SRR11452240	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	21.51
SRR11452217	whole organisms · ambient pH treatment	whole organisms	fertilized embryo	ambient pH treatment	SRP254626	20.19
SRR11452251	whole organisms · ambient pH treatment	whole organisms	egg	ambient pH treatment	SRP254626	17.42
SRR11452233	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	15.97
SRR11452230	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	15.94
SRR11452222	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	13.75
SRR11452234	whole organisms · ambient pH treatment	whole organisms	morula	ambient pH treatment	SRP254626	13.44
SRR11452228	whole organisms · ambient pH treatment	whole organisms	planulae	ambient pH treatment	SRP254626	12.46
SRR11452243	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	11.88
SRR11452232	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	11.49
SRR11452242	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	11.46
SRR11452237	whole organisms · ambient pH treatment	whole organisms	gastrula	ambient pH treatment	SRP254626	8.81
SRR11452231	whole organisms · ambient pH treatment	whole organisms	blastula	ambient pH treatment	SRP254626	7.67
SRR11452247	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	45.79
SRR11452245	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	41.11
SRR11452249	whole organisms · low pH treatment	whole organisms	prawn chip	low pH treatment	SRP254626	36.59
SRR11452258	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	29.84
SRR11452229	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	28.25
SRR11452253	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	26.97
SRR11452218	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	24.10
SRR11452255	whole organisms · low pH treatment	whole organisms	cleavage	low pH treatment	SRP254626	22.39
SRR11452216	whole organisms · low pH treatment	whole organisms	fertilized embryo	low pH treatment	SRP254626	14.40
SRR11452241	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	12.66
SRR11452236	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	11.88
SRR11452224	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	10.29
SRR11452238	whole organisms · low pH treatment	whole organisms	gastrula	low pH treatment	SRP254626	10.08
SRR11452223	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	9.33
SRR11452221	whole organisms · low pH treatment	whole organisms	planulae	low pH treatment	SRP254626	7.66
SRR11452248	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	39.77
SRR11452257	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	34.04
SRR11452244	whole organisms · extra low pH treatment pH treatment	whole organisms	prawn chip	extra low pH treatment pH treatment	SRP254626	32.04
SRR11452256	whole organisms · extra low pH treatment pH treatment	whole organisms	cleavage	extra low pH treatment pH treatment	SRP254626	25.72
SRR11452219	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	23.48
SRR11452261	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	17.15
SRR11452239	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	14.67
SRR11452227	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	13.69
SRR11452225	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	11.28
SRR11452235	whole organisms · extra low pH treatment pH treatment	whole organisms	gastrula	extra low pH treatment pH treatment	SRP254626	10.90
SRR11452220	whole organisms · extra low pH treatment pH treatment	whole organisms	fertilized embryo	extra low pH treatment pH treatment	SRP254626	9.96
SRR11452226	whole organisms · extra low pH treatment pH treatment	whole organisms	planulae	extra low pH treatment pH treatment	SRP254626	8.96

Source: CnidoSite RNA-seq expression matrices (MCAPI_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.