Detailed information of g1117.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_027057960.1, retinol dehydrogenase 7-like isoform X2 [Pocillopora damicornis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
P55006Retinol dehydrogenase 7 OS=Rattus norvegicus OX=10116 GN=Rdh7 PE=1 SV=1
O1475617-beta-hydroxysteroid dehydrogenase type 6 OS=Homo sapiens OX=9606 GN=HSD17B6 PE=1 SV=1
O5475317-beta-hydroxysteroid dehydrogenase type 6 OS=Rattus norvegicus OX=10116 GN=Hsd17b6 PE=1 SV=2
Gene familySubfamily
Ubiquitin FamilyUBD|Other|SH3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13763DUF4167Domain of unknown function (DUF4167)FamilyInterproscan
PF00106adh_shortshort chain dehydrogenaseDomainInterproscan
PF05181XPA_CXPA protein C-terminusDomainInterproscan
PF01286XPA_NXPA protein N-terminalDomainInterproscan
PF05970PIF1PIF1-like helicaseFamilyInterproscan
PF21530Pif1_2B_domDNA helicase Pif1, 2B domainDomainInterproscan
PF07653SH3_2Variant SH3 domainDomainInterproscan
PF00246Peptidase_M14Zinc carboxypeptidaseDomainInterproscan
PF13620CarboxypepD_regCarboxypeptidase regulatory-like domainDomainInterproscan
PF09415CENP-XCENP-S associating Centromere protein XDomainInterproscan
PF00453Ribosomal_L20Ribosomal protein L20FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025430DomainDomain of unknown function DUF4167Interproscan
IPR013087DomainZinc finger C2H2-typeInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR002347FamilyShort-chain dehydrogenase/reductase SDRInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR037129Homologous_superfamilyXPA domain superfamilyInterproscan
IPR000465FamilyXPA/RAD14Interproscan
IPR009061Homologous_superfamilyPutative DNA-binding domain superfamilyInterproscan
IPR022656DomainXPA, C-terminalInterproscan
IPR022652Conserved_siteZinc finger, XPA-type, conserved siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR051055FamilyPIF1 DNA helicaseInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR048293FamilyDNA helicase PIF1/RRM3/pfh1Interproscan
IPR010285FamilyDNA helicase Pif1-likeInterproscan
IPR049163DomainDNA helicase Pif1-like, 2B domainInterproscan
IPR040325FamilyRIMS-binding protein 1/2/3Interproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR001452DomainSH3 domainInterproscan
IPR008969Homologous_superfamilyCarboxypeptidase-like, regulatory domain superfamilyInterproscan
IPR000834DomainPeptidase M14, carboxypeptidase AInterproscan
IPR050753FamilyPeptidase M14 domain-containing proteinInterproscan
IPR018552FamilyCentromere protein XInterproscan
IPR035566Homologous_superfamilyRibosomal protein bL20, C-terminalInterproscan
IPR005813FamilyLarge ribosomal subunit protein bL20Interproscan
IPR039181FamilyEIG121-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23509PA-PL1 PHOSPHOLIPASE FAMILYInterproscan
PTHR43313SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9CInterproscan
PTHR10142DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLSInterproscan
PTHR47642ATP-DEPENDENT DNA HELICASEInterproscan
PTHR14234RIM BINDING PROTEIN-RELATEDInterproscan
PTHR11532PROTEASE M14 CARBOXYPEPTIDASEInterproscan
PTHR28680CENTROMERE PROTEIN XInterproscan
PTHR1098639S RIBOSOMAL PROTEIN L20Interproscan
PTHR22727PROTEIN CBG13728Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004620Molecular Functionphospholipase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0008202Biological Processsteroid metabolic processInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:0043231Cellular Componentintracellular membrane-bounded organelleInterproscan
GO:0003684Molecular Functiondamaged DNA bindingInterproscan
GO:0006289Biological Processnucleotide-excision repairInterproscan
GO:0000110Cellular Componentnucleotide-excision repair factor 1 complexInterproscan
GO:0000715Biological Processnucleotide-excision repair, DNA damage recognitionInterproscan
GO:0006284Biological Processbase-excision repairInterproscan
GO:0033683Biological Processobsolete nucleotide-excision repair, DNA incisionInterproscan
GO:0070914Biological ProcessUV-damage excision repairInterproscan
GO:1901255Biological Processnucleotide-excision repair involved in interstrand cross-link repairInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0000723Biological Processtelomere maintenanceInterproscan
GO:0003678Molecular FunctionDNA helicase activityInterproscan
GO:0006281Biological ProcessDNA repairInterproscan
GO:0007274Biological Processneuromuscular synaptic transmissionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004181Molecular Functionmetallocarboxypeptidase activityInterproscan
GO:0006508Biological ProcessproteolysisInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0006518Biological Processpeptide metabolic processInterproscan
GO:0016485Biological Processprotein processingInterproscan
GO:0051382Biological Processkinetochore assemblyInterproscan
GO:0000712Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0031297Biological Processreplication fork processingInterproscan
GO:0043240Cellular ComponentFanconi anaemia nuclear complexInterproscan
GO:0071821Cellular ComponentFANCM-MHF complexInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0019843Molecular FunctionrRNA bindingInterproscan
GO:0000027Biological Processribosomal large subunit assemblyInterproscan
GO:0005761Cellular Componentmitochondrial ribosomeInterproscan
GO:0016021Cellular ComponentmembraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15360STRA13, CENPX, MHF2; centromere protein X-Ovarian steroidogenesisko04913deepkoala
Ribosomeko03011deepkoala
Mitochondrial biogenesisko03029deepkoala
DNA repair and recombination proteinsko03400deepkoala
DNA repair and recombination proteinsko03400deepkoala

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