Gene detail

Detailed information of g1120.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: CAH3024325.1, unnamed protein product [Porites evermanni]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R4P9	ATP-binding cassette sub-family C member 10 OS=Mus musculus OX=10090 GN=Abcc10 PE=1 SV=1
Q5T3U5	ATP-binding cassette sub-family C member 10 OS=Homo sapiens OX=9606 GN=ABCC10 PE=1 SV=1
Q9SKX0	ABC transporter C family member 13 OS=Arabidopsis thaliana OX=3702 GN=ABCC13 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000027 (this species only)
Orthogroup (gene family)	OG0000077 (this species only)
Orthogroup (gene family)	OG0000694 (this species only)
Orthogroup (gene family)	OG0001124 (this species only)
Orthogroup (gene family)	OG0001830 (this species only)
Orthogroup (gene family)	OG0002273 (this species only)
Orthogroup (gene family)	OG0003096 (this species only)
Orthogroup (gene family)	OG0007484 (this species only)
Orthogroup (gene family)	OG0021362 (this species only)
Orthogroup (gene family)	OG0029684 (this species only)
Orthogroup (gene family)	OG0170955 (this species only)
Orthogroup (gene family)	OG0171895 (this species only)
Orthogroup (gene family)	OG0173931 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05729 all species →	NACHT	NACHT domain	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF05148 all species →	Methyltransf_8	Hypothetical methyltransferase	Family	Interproscan
PF02138 all species →	Beach	Beige/BEACH domain	Family	Interproscan
PF14844 all species →	PH_BEACH	PH domain associated with Beige/BEACH	Domain	Interproscan
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF00268 all species →	Ribonuc_red_sm	Ribonucleotide reductase, small chain	Domain	Interproscan
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007111 all species →	Domain	NACHT nucleoside triphosphatase	Interproscan
IPR051191 all species →	Family	DDB1-CUL4-associated factor 12	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR042036 all species →	Homologous_superfamily	Ribosomal RNA-processing protein 8, N-terminal domain	Interproscan
IPR007823 all species →	Family	Ribosomal RNA processing protein 8	Interproscan
IPR023362 all species →	Domain	PH-BEACH domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR000409 all species →	Domain	BEACH domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036372 all species →	Homologous_superfamily	BEACH domain superfamily	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR050865 all species →	Family	BEACH Domain-Containing	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR050173 all species →	Family	ATP-binding cassette transporter C	Interproscan
IPR012348 all species →	Homologous_superfamily	Ribonucleotide reductase-like	Interproscan
IPR009078 all species →	Homologous_superfamily	Ferritin-like superfamily	Interproscan
IPR000358 all species →	Family	Ribonucleotide reductase small subunit family	Interproscan
IPR033909 all species →	Family	Ribonucleotide reductase small subunit	Interproscan
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR050930 all species →	Family	Major Facilitator Superfamily Vesicular Transporter	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19860 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED	Interproscan
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan
PTHR12787 all species →	UNCHARACTERIZED	Interproscan
PTHR13743 all species →	BEIGE/BEACH-RELATED	Interproscan
PTHR24223 all species →	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan
PTHR23409 all species →	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN	Interproscan
PTHR23506 all species →	-	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan
GO:0000183 all species →	Biological Process	rDNA heterochromatin formation	Interproscan
GO:0005677 all species →	Cellular Component	chromatin silencing complex	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0033553 all species →	Cellular Component	rDNA heterochromatin	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan
GO:0042149 all species →	Biological Process	cellular response to glucose starvation	Interproscan
GO:0046015 all species →	Biological Process	regulation of transcription by glucose	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0009263 all species →	Biological Process	deoxyribonucleotide biosynthetic process	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05674	ABCC10; ATP-binding cassette, subfamily C (CFTR/MRP), member 10	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.