Gene detail

Detailed information of g11226.t1 in Acropora digitifera

Genomic Location: chr5Alt:15951901...16004563
NR annotation: XP_044167276.1, plexin A3-like isoform X1 [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

g11226.t1

ATGGATATCACCGCAATGCTTGTGTTAGCTTTGATCATCTTTTCATCTTTTCCCTGTTCATTGTATGGAAAGTCTCATGAATTGAAGTTAAGTGATGACCTTGTGAATATGGATTTTGACAACATTACTGGTAACATTTTTGTTGGAGGGAAAAATGTTTTGCTAAAATTATCGCCATCTCTAGTGGTACTCAAGAGAATCTCAACTGGGCCTGAGTTGGATTACATCAATTGTCCTGTGGGAGAGTGTGATGGACAAGATGCTAATAATACCAACAAAGTGTTACTCATCTATTATCATAATAGAACAAAACGCTCTCTCGTGACTTGTGGAAGCATCAAGCATGGCCAATGTCAGTTGAGAAATATTGACTCATTAAAGATTGAATCAAGAAAGAATTCTGTTGTGTCAAATTCTCCTCTGCCTGCTGTTGCACTAATTGCGCCTGTCCAGCAAAAACTTGCTCTGTATGTTGGAACATCTTGGGATGACAAGTATAACAAGGGCCGTTTGGCTGTTATGGAGAAACTTTCAGTCTCTACGCGGAACATAGATGGCAAAAATATTTTTGAATTGTCTGCTACCGCTTTTCCTGGTGGATATAGTTTTTTGCAGTTCACTGATGGTGATTTTAACTACAGGGTGAAATACATCTATGGATTCTCGTCTGGTAACTTCAACTATTTTGTGACAGTGCAGGAAACTGCTGAATCATTTGCAAAGAGATTTGAACCAAAAGTGATGAAATCATTTATTACTCGTATTTGTCAGCAAGATATTTCTTACAAGTTTTATGTTGAGCTTCCATTGGAATGTAAGTCGAGGGGGAGAAGCTTCAACATAGCACAGTCGGGTTATTTAACAAAGCCTGGAGGATGGTATTACAAGTTCTCCTCTCTTCAAGCATCAGATGATGTTCTAGTAGTGACACTTTTTGAGAGCACTACTGGTTGGGAGGTTGGACCATCTCAAAACTCTGTTATTTGTTTGTATCCAGTCAAAGAAATAAACAAGGCAATGGCATCAGATCAACAGAAATGTGTTAATGGCACATATGAAAAACTTGGTTTGCACTTAGGATTACCTTGGCTGGATGGAGGTGCTGAAGCATGCAGTTATAAGAGTTCATTACGTATAACACCAGAATATTGTCCAATTAAGACATCAAGGAATAATGATTACAATCCTTATCGTGGCAAGGAATCTCTTTGCAAAGATGCCATCTTAGAATACAGTAACAGAACACTCACTGCAGTTACAGCCATGCCTTATCACAATGACACTGTGATATTTGTTGGGACATACAAAGGGCAGCTACTGAAGCTATCAGTTCGAGATGGTACACGGAAAGTGGAACCTTATAAGAAGTTGATGATTGGTACTATGGAGGTGCGACAAATCAAACTCTCTGCTGACTTCAAATATTTGATGGTCTTGAGTGTGGATAAGGTAACAAAAGTTCCAGTAGAAGATCAATGCAACTTGTCTTCAACATGTAGAGACTGTGTTCAGCTCAACAATCCATTCTGTGGGTGGTGCACATTACACAACAAGTGCTCCAGAAGAGAGCAGTGCCATCAAGTGGAAGTACATCCTTTCCATTTCAGTACAAACGAGTCAGATTGTGTCCAATTTACATCAGTCACTCCTGACAAAATTCCTCTTGGCTTAAGTGTTACCTTGAATTTAAGTTTGTCCAACCTGCCTCCCTCAAATTCATACAAGTGCTACATTAACAAGAAAGAAAGACCTTCTCAGATGATAGATCAGGGCTTTTTGCAATGTAGTACTCCTCCTGGAAGTGAACTTCCCAGTATATCAAGTGAAACAGGAGATGTCTTTGTTGATCTTGAGCTTTTTTCAATGGAATCAAACCAATTTTTGGTAAGGACCAAGGTTGCATTTTACAGCTGTCCTGCTATTCAAAGATGTAGACATTGTGCTGAAGGGAGGTATGATTGCAGTTGGTGTACATATCTACAGAAATGTACGAATGATGGCACCACAGACTGTCCAGGAGAGTACATTCATCCAGTTCAGCAGAAAGATACCATCAGTCCAAGTGGATGTCCCATGTTAAAAGCAAACACAGTCAGGCTAATTCCAGTGGGAATAGAAACTAATATAACAATCCCTGGTCAAAATCTTCCTCTGTCAAAGTTCTCTCCTTTTTTTTATCCAAATGAACGTAAAATAGTATTGGAATAA

Transcript

chr5Alt.g11226.t1

TAGTTAGCCTTCTTGTGCAACTCATTTCCAATGACTTGTGTAAATTGAAGTTTTTAGTAACAAAATTTAATGTCTCTTGAGATGCAAGTTTGTTAATTATGGATATCACCGCAATGCTTGTGTTAGCTTTGATCATCTTTTCATCTTTTCCCTGTTCATTGTATGGAAAGTCTCATGAATTGAAGTTAAGTGATGACCTTGTGAATATGGATTTTGACAACATTACTGGTAACATTTTTGTTGGAGGGAAAAATGTTTTGCTAAAATTATCGCCATCTCTAGTGGTACTCAAGAGAATCTCAACTGGGCCTGAGTTGGATTACATCAATTGTCCTGTGGGAGAGTGTGATGGACAAGATGCTAATAATACCAACAAAGTGTTACTCATCTATTATCATAATAGAACAAAACGCTCTCTCGTGACTTGTGGAAGCATCAAGCATGGCCAATGTCAGTTGAGAAATATTGACTCATTAAAGATTGAATCAAGAAAGAATTCTGTTGTGTCAAATTCTCCTCTGCCTGCTGTTGCACTAATTGCGCCTGTCCAGCAAAAACTTGCTCTGTATGTTGGAACATCTTGGGATGACAAGTATAACAAGGGCCGTTTGGCTGTTATGGAGAAACTTTCAGTCTCTACGCGGAACATAGATGGCAAAAATATTTTTGAATTGTCTGCTACCGCTTTTCCTGGTGGATATAGTTTTTTGCAGTTCACTGATGGTGATTTTAACTACAGGGTGAAATACATCTATGGATTCTCGTCTGGTAACTTCAACTATTTTGTGACAGTGCAGGAAACTGCTGAATCATTTGCAAAGAGATTTGAACCAAAAGTGATGAAATCATTTATTACTCGTATTTGTCAGCAAGATATTTCTTACAAGTTTTATGTTGAGCTTCCATTGGAATGTAAGTCGAGGGGGAGAAGCTTCAACATAGCACAGTCGGGTTATTTAACAAAGCCTGGAGGATGGTATTACAAGTTCTCCTCTCTTCAAGCATCAGATGATGTTCTAGTAGTGACACTTTTTGAGAGCACTACTGGTTGGGAGGTTGGACCATCTCAAAACTCTGTTATTTGTTTGTATCCAGTCAAAGAAATAAACAAGGCAATGGCATCAGATCAACAGAAATGTGTTAATGGCACATATGAAAAACTTGGTTTGCACTTAGGATTACCTTGGCTGGATGGAGGTGCTGAAGCATGCAGTTATAAGAGTTCATTACGTATAACACCAGAATATTGTCCAATTAAGACATCAAGGAATAATGATTACAATCCTTATCGTGGCAAGGAATCTCTTTGCAAAGATGCCATCTTAGAATACAGTAACAGAACACTCACTGCAGTTACAGCCATGCCTTATCACAATGACACTGTGATATTTGTTGGGACATACAAAGGGCAGCTACTGAAGCTATCAGTTCGAGATGGTACACGGAAAGTGGAACCTTATAAGAAGTTGATGATTGGTACTATGGAGGTGCGACAAATCAAACTCTCTGCTGACTTCAAATATTTGATGGTCTTGAGTGTGGATAAGGTAACAAAAGTTCCAGTAGAAGATCAATGCAACTTGTCTTCAACATGTAGAGACTGTGTTCAGCTCAACAATCCATTCTGTGGGTGGTGCACATTACACAACAAGTGCTCCAGAAGAGAGCAGTGCCATCAAGTGGAAGTACATCCTTTCCATTTCAGTACAAACGAGTCAGATTGTGTCCAATTTACATCAGTCACTCCTGACAAAATTCCTCTTGGCTTAAGTGTTACCTTGAATTTAAGTTTGTCCAACCTGCCTCCCTCAAATTCATACAAGTGCTACATTAACAAGAAAGAAAGACCTTCTCAGATGATAGATCAGGGCTTTTTGCAATGTAGTACTCCTCCTGGAAGTGAACTTCCCAGTATATCAAGTGAAACAGGAGATGTCTTTGTTGATCTTGAGCTTTTTTCAATGGAATCAAACCAATTTTTGGTAAGGACCAAGGTTGCATTTTACAGCTGTCCTGCTATTCAAAGATGTAGACATTGTGCTGAAGGGAGGTATGATTGCAGTTGGTGTACATATCTACAGAAATGTACGAATGATGGCACCACAGACTGTCCAGGAGAGTACATTCATCCAGTTCAGCAGAAAGATACCATCAGTCCAAGTGGATGTCCCATGTTAAAAGCAAACACAGTCAGGCTAATTCCAGTGGGAATAGAAACTAATATAACAATCCCTGGTCAAAATCTTCCTCTGTCAAAGTTCTCTCCTTTTTTTTATCCAAATGAACGTAAAATAGTATTGGAATAACTCGGAAACCTCACAGTTCCTTTAGCCCTAGGCTCCAAATAATTTATCTCTCTTTCTTGTTATCCAATTATAAATTTGTAAATTAATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0S5N4	Plexin A3 OS=Danio rerio OX=7955 GN=plxna3 PE=2 SV=2
Q6BEA0	Plexin-A4 OS=Danio rerio OX=7955 GN=plxna4 PE=2 SV=1
Q80UG2	Plexin-A4 OS=Mus musculus OX=10090 GN=Plxna4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan
PF17960 all species →	TIG_plexin	TIG domain	Domain	Interproscan
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR031148 all species →	Family	Plexin family	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR041019 all species →	Domain	Plexin, TIG domain 1	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22625 all species →	PLEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002116 all species →	Cellular Component	semaphorin receptor complex	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0017154 all species →	Molecular Function	semaphorin receptor activity	Interproscan
GO:0030334 all species →	Biological Process	regulation of cell migration	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:1902287 all species →	Biological Process	semaphorin-plexin signaling pathway involved in axon guidance	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for g11226.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.