Gene detail

Detailed information of g1125.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: CAH1240223.1, PEX5 [Branchiostoma lanceolatum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5ZMQ9	Peroxisomal targeting signal 1 receptor OS=Gallus gallus OX=9031 GN=PEX5 PE=2 SV=1
A0A1L8FDW4	Peroxisomal targeting signal 1 receptor OS=Xenopus laevis OX=8355 GN=pex5.S PE=1 SV=1
P50542	Peroxisomal targeting signal 1 receptor OS=Homo sapiens OX=9606 GN=PEX5 PE=1 SV=3

Gene family	Subfamily
Transcription Factors Family	ARID

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF04750	Far-17a_AIG1	FAR-17a/AIG1-like protein	Family	Interproscan
PF01388	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan
PF01594	AI-2E_transport	AI-2E family transporter	Family	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan
PF14912	THEG	Testicular haploid expressed repeat	Repeat	Interproscan
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF01825	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF16540	MKLP1_Arf_bdg	Arf6-interacting domain of mitotic kinesin-like protein 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR050348	Family	Protein-Tyrosine Phosphatase	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR006838	Family	ADTRP/AIG1	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR001606	Domain	ARID DNA-binding domain	Interproscan
IPR036431	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR052406	Family	Chromatin Remodeling Complex Component	Interproscan
IPR035992	Homologous_superfamily	Ricin B-like lectins	Interproscan
IPR002549	Family	Transmembrane protein TqsA-like	Interproscan
IPR024111	Family	PEX5/PEX5L	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006623	Repeat	Testicular haploid expressed repeat	Interproscan
IPR042401	Family	Sperm microtubule associated protein 2-like	Interproscan
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR046338	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR000203	Conserved_site	GPS motif	Interproscan
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR032384	Domain	Kinesin-like protein Kif23, Arf6-interacting domain	Interproscan
IPR038105	Homologous_superfamily	Kinesin-like protein Kif23, Arf6-interacting domain superfamily	Interproscan
IPR001752	Domain	Kinesin motor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19134	RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE	Interproscan
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan
PTHR10989	ANDROGEN-INDUCED PROTEIN 1-RELATED	Interproscan
PTHR22970	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2	Interproscan
PTHR21716	TRANSMEMBRANE PROTEIN	Interproscan
PTHR10130	PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5	Interproscan
PTHR15901	TESTICULAR HAPLOID EXPRESSED GENE PROTEIN	Interproscan
PTHR45692	G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0012505	Cellular Component	endomembrane system	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0070603	Cellular Component	SWI/SNF superfamily-type complex	Interproscan
GO:0005052	Molecular Function	peroxisome matrix targeting signal-1 binding	Interproscan
GO:0005778	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016560	Biological Process	protein import into peroxisome matrix, docking	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007283	Biological Process	spermatogenesis	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0003777	Molecular Function	microtubule motor activity	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K11927	rhlE; ATP-dependent RNA helicase RhlE	EC:5.6.2.7	Membrane trafficking	ko04131	deepkoala
			Chromosome and associated proteins	ko03036	deepkoala
			Messenger RNA biogenesis	ko03019	deepkoala