Detailed information of g1127.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_031571108.1, echinoderm microtubule-associated protein-like 2 [Actinia tenebrosa]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
O45487Echinoderm microtubule-associated protein-like elp-1 OS=Caenorhabditis elegans OX=6239 GN=elp-1 PE=3 SV=1
Q8R3C6Probable RNA-binding protein 19 OS=Mus musculus OX=10090 GN=Rbm19 PE=1 SV=1
Q9Y4C8Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20742DUF5580_MFamily of unknown function (DUF5580) middle domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF04597Ribophorin_IRibophorin IFamilyInterproscan
PF03237Terminase_6NTerminase large subunit, T4likevirus-type, N-terminalDomainInterproscan
PF00241Cofilin_ADFCofilin/tropomyosin-type actin-binding proteinDomainInterproscan
PF14920MTBP_CMDM2-bindingFamilyInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002048DomainEF-hand domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR049246DomainDUF5580, middle domainInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR011047Homologous_superfamilyQuinoprotein alcohol dehydrogenase-like superfamilyInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR050630FamilyWD repeat Echinoderm Microtubule-associated Protein-likeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR007676FamilyRibophorin IInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR029006Homologous_superfamilyADF-H/Gelsolin-like domain superfamilyInterproscan
IPR017904FamilyADF/CofilinInterproscan
IPR002108DomainActin-depolymerising factor homology domainInterproscan
IPR052387FamilyFibrocystin-related proteinInterproscan
IPR042453FamilyWD repeat-containing protein 53Interproscan
IPR029418DomainMDN2-binding protein, C-terminal domainInterproscan
IPR039061FamilyMDN2-binding proteinInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR051945FamilyRRM MRD1 RNA Processing and Ribosome BiogenesisInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR034423DomainProbable RNA-binding protein 19, RNA recognition motif 5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13720WD-40 REPEAT PROTEINInterproscan
PTHR21049RIBOPHORIN IInterproscan
PTHR11913COFILIN-RELATEDInterproscan
PTHR46769POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1Interproscan
PTHR44666WD REPEAT-CONTAINING PROTEIN 53Interproscan
PTHR14382MDM2-BINDING PROTEINInterproscan
PTHR48039RNA-BINDING MOTIF PROTEIN 14BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006486Biological Processprotein glycosylationInterproscan
GO:0008250Cellular Componentoligosaccharyltransferase complexInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0018279Biological Processprotein N-linked glycosylation via asparagineInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0015629Cellular Componentactin cytoskeletonInterproscan
GO:0030042Biological Processactin filament depolymerizationInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan
GO:0003779Molecular Functionactin bindingInterproscan
GO:0000776Cellular ComponentkinetochoreInterproscan
GO:0007089Biological Processtraversing start control point of mitotic cell cycleInterproscan
GO:0031396Biological Processregulation of protein ubiquitinationInterproscan
GO:0034501Biological Processprotein localization to kinetochoreInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14787MRD1, RBM19; multiple RNA-binding domain-containing protein 1-Chromosome and associated proteinsko03036deepkoala
Ribosome biogenesisko03009deepkoala

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