Gene detail

Detailed information of g1128.t1 in Calvadosia cruxmelitensis

Genomic Location: not available for this species
NR annotation: XP_045198524.2, stomatin-like isoform X2 [Mercenaria mercenaria]
Species Calvadosia cruxmelitensis · all data for this species · gene families

Sequence

Sequence data are not available for Calvadosia cruxmelitensis.
Nucleotide and protein sequences are provided for the species whose genome annotation is complete (see annotated genomes); for this species only the assembly is archived. The functional annotation below is likewise unavailable.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TAV4	Stomatin-like protein 3 OS=Homo sapiens OX=9606 GN=STOML3 PE=1 SV=1
P54116	Stomatin OS=Mus musculus OX=10090 GN=Stom PE=1 SV=3
P27105	Stomatin OS=Homo sapiens OX=9606 GN=STOM PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000011 (this species only)
Orthogroup (gene family)	OG0000137 (this species only)
Orthogroup (gene family)	OG0000481 (this species only)
Orthogroup (gene family)	OG0000607 (this species only)
Orthogroup (gene family)	OG0001963 (this species only)
Orthogroup (gene family)	OG0002069 (this species only)
Orthogroup (gene family)	OG0003431 (this species only)
Orthogroup (gene family)	OG0004132 (this species only)
Orthogroup (gene family)	OG0005894 (this species only)
Orthogroup (gene family)	OG0007941 (this species only)
Orthogroup (gene family)	OG0018061 (this species only)
Orthogroup (gene family)	OG0171936 (this species only)
Orthogroup (gene family)	OG0174380 (this species only)
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20146 all species →	NRF	Nose resistant-to-fluoxetine protein, N-terminal domain	Domain	Interproscan
PF01562 all species →	Pep_M12B_propep	Reprolysin family propeptide	Family	Interproscan
PF01847 all species →	VHL	VHL beta domain	Domain	Interproscan
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF00022 all species →	Actin	Actin	Family	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF10300 all species →	Iml2-TPR_39	Iml2/Tetratricopeptide repeat protein 39	Repeat	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006621 all species →	Domain	Nose resistant-to-fluoxetine protein, N-terminal	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR003591 all species →	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR037140 all species →	Homologous_superfamily	von Hippel-Lindau disease tumour suppressor, beta domain superfamily	Interproscan
IPR002870 all species →	Domain	Peptidase M12B, propeptide	Interproscan
IPR036208 all species →	Homologous_superfamily	VHL superfamily	Interproscan
IPR024053 all species →	Domain	von Hippel-Lindau disease tumour suppressor, beta domain	Interproscan
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR004000 all species →	Family	Actin family	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR019412 all species →	Family	Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR045844 all species →	Domain	Ist3-like, RNA recognition motif	Interproscan
IPR051847 all species →	Family	RNA Processing and Spliceosome Component	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR043202 all species →	Family	Band-7 stomatin-like	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR027124 all species →	Family	SWR1-complex protein 5/Craniofacial development protein 1/2	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22710 all species →	X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1	Interproscan
PTHR11905 all species →	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	Interproscan
PTHR11937 all species →	ACTIN	Interproscan
PTHR19446 all species →	REVERSE TRANSCRIPTASES	Interproscan
PTHR31859 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER	Interproscan
PTHR45880 all species →	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	Interproscan
PTHR10264 all species →	BAND 7 PROTEIN-RELATED	Interproscan
PTHR23227 all species →	BUCENTAUR RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0000812 all species →	Cellular Component	Swr1 complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0043486 all species →	Biological Process	obsolete histone exchange	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005686 all species →	Cellular Component	U2 snRNP	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13107	RBMX2, IST3; RNA-binding motif protein, X-linked 2	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.