Detailed information of g1128.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: XP_045198524.2, stomatin-like isoform X2 [Mercenaria mercenaria]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q8TAV4Stomatin-like protein 3 OS=Homo sapiens OX=9606 GN=STOML3 PE=1 SV=1
P54116Stomatin OS=Mus musculus OX=10090 GN=Stom PE=1 SV=3
P27105Stomatin OS=Homo sapiens OX=9606 GN=STOM PE=1 SV=3
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity|HECT

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20146NRFNose resistant-to-fluoxetine protein, N-terminal domainDomainInterproscan
PF01562Pep_M12B_propepReprolysin family propeptideFamilyInterproscan
PF01847VHLVHL beta domainDomainInterproscan
PF00632HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF00022ActinActinFamilyInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF10300Iml2-TPR_39Iml2/Tetratricopeptide repeat protein 39RepeatInterproscan
PF00076RRM_1RNA recognition motifDomainInterproscan
PF01145Band_7SPFH domain / Band 7 familyFamilyInterproscan
PF03372Exo_endo_phosEndonuclease/Exonuclease/phosphatase familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006621DomainNose resistant-to-fluoxetine protein, N-terminalInterproscan
IPR001611RepeatLeucine-rich repeatInterproscan
IPR032675Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR003591RepeatLeucine-rich repeat, typical subtypeInterproscan
IPR037140Homologous_superfamilyvon Hippel-Lindau disease tumour suppressor, beta domain superfamilyInterproscan
IPR002870DomainPeptidase M12B, propeptideInterproscan
IPR036208Homologous_superfamilyVHL superfamilyInterproscan
IPR024053Domainvon Hippel-Lindau disease tumour suppressor, beta domainInterproscan
IPR000569DomainHECT domainInterproscan
IPR035983Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR004000FamilyActin familyInterproscan
IPR043129Homologous_superfamilyATPase, nucleotide binding domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR043502Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR019412FamilyInclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39Interproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR045844DomainIst3-like, RNA recognition motifInterproscan
IPR051847FamilyRNA Processing and Spliceosome ComponentInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR043202FamilyBand-7 stomatin-likeInterproscan
IPR001107DomainBand 7 domainInterproscan
IPR036691Homologous_superfamilyEndonuclease/exonuclease/phosphatase superfamilyInterproscan
IPR027124FamilySWR1-complex protein 5/Craniofacial development protein 1/2Interproscan
IPR005135DomainEndonuclease/exonuclease/phosphataseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22710X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1Interproscan
PTHR11905ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAINInterproscan
PTHR11937ACTINInterproscan
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR31859TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBERInterproscan
PTHR45880RNA-BINDING MOTIF PROTEIN, X-LINKED 2Interproscan
PTHR10264BAND 7 PROTEIN-RELATEDInterproscan
PTHR23227BUCENTAUR RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0000812Cellular ComponentSwr1 complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0043486Biological Processobsolete histone exchangeInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005686Cellular ComponentU2 snRNPInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan
GO:0071013Cellular Componentcatalytic step 2 spliceosomeInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13107RBMX2, IST3; RNA-binding motif protein, X-linked 2-Spliceosomeko03041deepkoala

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