Detailed information of g1130.t1 in Calvadosia cruxmelitensis

Genomic Location: :...
NR annotation: KAJ8040760.1, Synaptonemal complex central element protein 2 [Holothuria leucospilota]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q86Y38Xylosyltransferase 1 OS=Homo sapiens OX=9606 GN=XYLT1 PE=1 SV=1
Q9EPI1Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Xylt1 PE=2 SV=1
Q5QQ57Xylosyltransferase 1 OS=Pan troglodytes OX=9598 GN=XYLT1 PE=2 SV=1
Gene familySubfamily
Transcription Factors FamilyE2F

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00855PWWPPWWP domainDomainInterproscan
PF00078RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00307CHCalponin homology (CH) domainDomainInterproscan
PF03271EB1EB1-like C-terminal motifFamilyInterproscan
PF09334tRNA-synt_1gtRNA synthetases class I (M)FamilyInterproscan
PF12529Xylo_CXylosyltransferase C terminal FamilyInterproscan
PF02485BranchCore-2/I-Branching enzymeFamilyInterproscan
PF08781DPTranscription factor DPDomainInterproscan
PF02319E2F_TDPE2F/DP family winged-helix DNA-binding domainDomainInterproscan
PF05676NDUF_B7NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)FamilyInterproscan
PF12763EF-hand_4Cytoskeletal-regulatory complex EF handFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000313DomainPWWP domainInterproscan
IPR000477DomainReverse transcriptase domainInterproscan
IPR001715DomainCalponin homology domainInterproscan
IPR036872Homologous_superfamilyCH domain superfamilyInterproscan
IPR004953DomainEB1, C-terminalInterproscan
IPR036133Homologous_superfamilyEB1, C-terminal domain superfamilyInterproscan
IPR027328FamilyMicrotubule-associated protein RP/EBInterproscan
IPR029038Homologous_superfamilyMethionyl-tRNA synthetase, Zn-domainInterproscan
IPR023458FamilyMethionine-tRNA ligase, type 1Interproscan
IPR014729Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR033911DomainMethioninyl-tRNA synthetase core domainInterproscan
IPR001412Conserved_siteAminoacyl-tRNA synthetase, class I, conserved siteInterproscan
IPR015413DomainMethionyl/Leucyl tRNA synthetaseInterproscan
IPR043538FamilyXylosyltransferaseInterproscan
IPR024448DomainXylosyltransferase, C-terminalInterproscan
IPR003406FamilyGlycosyl transferase, family 14Interproscan
IPR014889DomainTranscription factor DP, C-terminalInterproscan
IPR015648FamilyTranscription factor DPInterproscan
IPR003316DomainE2F/DP family, winged-helix DNA-binding domainInterproscan
IPR036390Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR038168Homologous_superfamilyTranscription factor DP, C-terminal domain superfamilyInterproscan
IPR037241Homologous_superfamilyE2F-DP heterodimerization regionInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR034609FamilySynaptonemal complex central element protein 2Interproscan
IPR012337Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR052035FamilyZinc finger BED domain-containingInterproscan
IPR036236Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR008698FamilyNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7, NDUB7Interproscan
IPR000261DomainEH domainInterproscan
IPR002048DomainEF-hand domainInterproscan
IPR011992Homologous_superfamilyEF-hand domain pairInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19446REVERSE TRANSCRIPTASESInterproscan
PTHR10623MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBERInterproscan
PTHR45765METHIONINE--TRNA LIGASEInterproscan
PTHR46025XYLOSYLTRANSFERASE OXTInterproscan
PTHR12548TRANSCRIPTION FACTOR DPInterproscan
PTHR28398SYNAPTONEMAL COMPLEX CENTRAL ELEMENT PROTEIN 2Interproscan
PTHR46481ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4Interproscan
PTHR20900NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNITInterproscan
PTHR11216EH DOMAINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008017Molecular Functionmicrotubule bindingInterproscan
GO:0005815Cellular Componentmicrotubule organizing centerInterproscan
GO:0005881Cellular Componentcytoplasmic microtubuleInterproscan
GO:0031110Biological Processregulation of microtubule polymerization or depolymerizationInterproscan
GO:0035371Cellular Componentmicrotubule plus-endInterproscan
GO:0035372Biological Processprotein localization to microtubuleInterproscan
GO:0051010Molecular Functionmicrotubule plus-end bindingInterproscan
GO:0051225Biological Processspindle assemblyInterproscan
GO:0051233Cellular Componentspindle midzoneInterproscan
GO:0004825Molecular Functionmethionine-tRNA ligase activityInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006431Biological Processmethionyl-tRNA aminoacylationInterproscan
GO:0017101Cellular Componentaminoacyl-tRNA synthetase multienzyme complexInterproscan
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0015012Biological Processheparan sulfate proteoglycan biosynthetic processInterproscan
GO:0030158Molecular Functionprotein xylosyltransferase activityInterproscan
GO:0030166Biological Processproteoglycan biosynthetic processInterproscan
GO:0050650Biological Processchondroitin sulfate proteoglycan biosynthetic processInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016757Molecular Functionglycosyltransferase activityInterproscan
GO:0000977Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005667Cellular Componenttranscription regulator complexInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0051726Biological Processregulation of cell cycleInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000801Cellular Componentcentral elementInterproscan
GO:0007130Biological Processsynaptonemal complex assemblyInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005747Cellular Componentobsolete mitochondrial respiratory chain complex IInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006897Biological ProcessendocytosisInterproscan
GO:0016197Biological Processendosomal transportInterproscan
GO:0042734Cellular Componentpresynaptic membraneInterproscan
GO:0060090Molecular Functionmolecular adaptor activityInterproscan
GO:0097708Cellular Componentintracellular vesicleInterproscan
GO:0150007Biological Processclathrin-dependent synaptic vesicle endocytosisInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03963NDUFB7; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7-Cytoskeleton proteinsko04812deepkoala
Non-alcoholic fatty liver diseaseko04932deepkoala

TOP