Gene detail

Detailed information of g11366.t1 in Acropora digitifera

Genomic Location: chr5Alt:18180521...18193320
NR annotation: XP_029213127.1, pleiotropic regulator 1-like [Acropora millepora]
Species Acropora digitifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

chr5Alt.g11366.t1

GTATGCGTATTAGTCGTAATCAAAATGGCGGAGGACATTGTAAAGCATTCCGTGCATACATTGGTATTTCGATCTTTAAAACGGAGCCATGATATGTTCCTCCATGATAATTCCCTGCCTCTGAAAAGAGACGACAAGAGTGACCAAGTGAAAAAGTCCTGTAAGATTCGTGATGAATATTTTATGGTCAAAGACTTTGCTGCGGCAAAAGAGAATTTATCTGGTATTAGACGTCCAGTGACTGGAGCCTACCCATCAAATCAAGTTTCAGACATTCCTCCACTAATAGAAGGAGCTCATCCTTATCCATCAGCAGCAGGTGTAGCATTAACTTCAGAAACAGCTGCAAACAGAACACAGCCTTCACACACAGGAGTTCAACAACTGATGTCCAGTCTACCTCCGACTGATTCACAACTTTCAGCTGGAAAAGAAAGTGTGAGTATCATGGAAATACAAAAGAAAGCTCTTGTACCAGCTGGTGGAAAAGAAAAAATGGCTCCATCATCCAAAGCATTAGTAGCAGCTGAAGGCACAAAATCCACCGCATTGATGCAACAAAGGAAAGCAACAAGTCTTCCCAAACCACAATGGCATCCACCTTGGAAACTTATGAGGGTTATCAGTGGTCACACTGGTTGGGTCAGGTCTGTGACTGTGGAGCCTGGTAATCAGTGGTTTGCTACTGGATCTGCAGACCGAACAATCAAGATCTGGGAACTTGGAAGTGGCAAGTTGAAGCTTTCGCTTACTGGTCACATCAGCACTGTCCGTGGATTAGCTGTTAGTTCAAGGCAACCGTATTTGTTCTCTTGTGGAGAAGATAAACAAGTAAAATGTTGGGATTTGGAATACAACAAGGTTGTCAGGCACTATCATGGTCATTTGAGTGCTATTTATTCCTTGGATCTTCATCCCACAATCGATGTTCTATTTACTTGTGGCAGGGATGCAACAACCAGGGTTTGGGACATGAGAACAAAAGCATGCATTCACACATTAACAGGTCACACAAGTACGGTGGCAGTTGTGAGATCACAAGCTGCAGAACCTCAGGTCATAACTGGAAGCCATGATTGTACCATTCGCCTATGGGACTTAGCAGCTGGTAAATCTAAAGTGACTTTGACAAATCACAAGAAAAGCATAAGAGCATTGGTCTTGCACCCAACACAGTTTTCATTTGCATCAGCCTCTCCTGACAACATCAAACAGTGGAAGTTCCCTGATGGCAATTTCCTTCAAAATCTTATTGGACACAATTCAATCGTAAACTGCATGACAGTAAACTCAGATGATGTTTTAGTTTCAGGGGGTGATAATGGAACCATGCACTTCTGGGACTGGAAGACTGGGTACAATTTTCAGCGTTCCCAGGCGTCTGTGCAGCCTGGGTCTCTTGACAGTGAGGCTGGTATATTTGCAATGACCTTTGATTTGAGTAGCAGTCGTCTTATTACATGTGAAGCTGATAAAACAATCAAGATATATAAGGAGGACGACACAGCTAGCGAAGAAACCCATCCTGTGAACTGGAAACCTGAAATCCTGAAGAGAAAGAGATATTAATGCTGCATGGAAATTGTTGTTTATTAGAACTGTTTGGGTATCTTCGCAGGTTCATGCATGTTATTTACCTCTTCTAGGTAGAAAGATCATCAATTCAGTTCTCTGTGATCATTTGTTTGATTTAGCTTGAACTATAGTCTTGTAACCTCATGTGCACATGCACATAGCTTATTTGTACAACTGCAGATTTGTAAATAGAAAATGCATGTGGCCCATTGGAGCAATGAGATTATGATGATGGTGAATATTACTGCCTTTTGATGGAACATTCAACCACTCAGTTGTACTCCTTGCACCACAATTCCTCCACTTAACTCTCCTTTTTTCTTTCTTCACAAAAGGAAACAATAATCCAAATCTTAAATTTTTAGTTGCCTGGGCAAAGCAACCCCATTCTCTTCTGAGAAGAGGGTGCAGTTACCTCTGTGCCTAAGAATTCCAAGTGGCTGAACACAGGCCAAGTTTTTCAATAAAAAAGTAAATGAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2KID6	Pleiotropic regulator 1 OS=Bos taurus OX=9913 GN=PLRG1 PE=2 SV=1
Q922V4	Pleiotropic regulator 1 OS=Mus musculus OX=10090 GN=Plrg1 PE=1 SV=1
O43660	Pleiotropic regulator 1 OS=Homo sapiens OX=9606 GN=PLRG1 PE=1 SV=1

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR045241 all species →	Family	WD repeat Prp46/PLRG1-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19923 all species →	WD40 REPEAT PROTEINPRL1/PRL2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0000974 all species →	Cellular Component	Prp19 complex	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12862	PLRG1, PRL1, PRP46; pleiotropic regulator 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of g11366.t1 across 39 RNA-seq samples of Acropora digitifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

39Samples

39TPM > 0

1Conditions

70.6Max TPM

46.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
Coral branch	39	39	46.55	70.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR23047214	Coral branch	Coral branch	adult	not recorded	SRP416931	70.58
SRR23047224	Coral branch	Coral branch	adult	not recorded	SRP416931	67.76
SRR23047206	Coral branch	Coral branch	adult	not recorded	SRP416931	62.82
SRR23047227	Coral branch	Coral branch	adult	not recorded	SRP416931	61.95
SRR23047217	Coral branch	Coral branch	adult	not recorded	SRP416931	61.09
SRR23047230	Coral branch	Coral branch	adult	not recorded	SRP416931	57.61
SRR23047240	Coral branch	Coral branch	adult	not recorded	SRP416931	54.97
SRR23047211	Coral branch	Coral branch	adult	not recorded	SRP416931	54.53
SRR23047234	Coral branch	Coral branch	adult	not recorded	SRP416931	54.08
SRR23047215	Coral branch	Coral branch	adult	not recorded	SRP416931	49.97
SRR23047225	Coral branch	Coral branch	adult	not recorded	SRP416931	49.83
SRR23047212	Coral branch	Coral branch	adult	not recorded	SRP416931	49.71
SRR23047237	Coral branch	Coral branch	adult	not recorded	SRP416931	48.67
SRR23047223	Coral branch	Coral branch	adult	not recorded	SRP416931	47.16
SRR23047226	Coral branch	Coral branch	adult	not recorded	SRP416931	47.02
SRR23047219	Coral branch	Coral branch	adult	not recorded	SRP416931	46.96
SRR23047236	Coral branch	Coral branch	adult	not recorded	SRP416931	45.96
SRR23047238	Coral branch	Coral branch	adult	not recorded	SRP416931	45.69
SRR23047213	Coral branch	Coral branch	adult	not recorded	SRP416931	45.55
SRR23047241	Coral branch	Coral branch	adult	not recorded	SRP416931	44.97
SRR23047231	Coral branch	Coral branch	adult	not recorded	SRP416931	43.66
SRR23047209	Coral branch	Coral branch	adult	not recorded	SRP416931	43.53
SRR23047210	Coral branch	Coral branch	adult	not recorded	SRP416931	43.36
SRR23047216	Coral branch	Coral branch	adult	not recorded	SRP416931	43.13
SRR23047233	Coral branch	Coral branch	adult	not recorded	SRP416931	42.88
SRR23047229	Coral branch	Coral branch	adult	not recorded	SRP416931	41.73
SRR23047235	Coral branch	Coral branch	adult	not recorded	SRP416931	40.96
SRR23047222	Coral branch	Coral branch	adult	not recorded	SRP416931	40.49
SRR23047232	Coral branch	Coral branch	adult	not recorded	SRP416931	40.41
SRR23047208	Coral branch	Coral branch	adult	not recorded	SRP416931	39.59
SRR23047207	Coral branch	Coral branch	adult	not recorded	SRP416931	38.90
SRR23047239	Coral branch	Coral branch	adult	not recorded	SRP416931	38.82
SRR23047218	Coral branch	Coral branch	adult	not recorded	SRP416931	38.72
SRR23047242	Coral branch	Coral branch	adult	not recorded	SRP416931	38.28
SRR23047228	Coral branch	Coral branch	adult	not recorded	SRP416931	35.93
SRR23047221	Coral branch	Coral branch	adult	not recorded	SRP416931	35.85
SRR23047220	Coral branch	Coral branch	adult	not recorded	SRP416931	34.87
SRR23047243	Coral branch	Coral branch	adult	not recorded	SRP416931	34.17
SRR23047244	Coral branch	Coral branch	adult	not recorded	SRP416931	33.30

Source: CnidoSite RNA-seq expression matrices (ADIGI_TPM, StringTie quantification over 39 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.