Gene detail

Detailed information of g11372.t1.1 in Blastomussa wellsi

Genomic Location: :...
NR annotation: CAB4007313.1, Retrovirus-related Pol poly from transposon TNT 1-94, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

g11372.t1

ATGGCCACGCTTGCAACAGGTTATGGGCCCAGTCGAAGGCTACTGTTCGATGGTGATGAAGCCAAATATGAGCTGTGGGAAATAAAATTCCTTGGATTTATGAGACTCCACAAATTGTACGATGTTATCTTGGCAGAAGAGGAGCCAAAAGAAGAAGATGTGGAGAAGAACATTGATGCTTTTGCTCAACTTATCCAGTGTTTAGATGATCGAAGCCTATCCTTGATTATGAGGGATGCCAAAGACGATGGTAGGAAAGCTCTGcaaatactgaggaatcactaCATGGGTAAAAGTAAACCACGTGTTCTTGCCCTGTACACTGAGCTTACTTCACTGCAGAAAGGTCACGATGAGTGCATTACTGATTATGTTCTACGCGCCGAATCTGCTGCTGCATCGCTAAAATCCGCCGGTGAGACAGTCAGTGATAGCCTCTTGATCGCTATGGTGTTGAAAGGTCTCCCTACGGAATACAAAACGTTTTCAGCGATCGTGTCGCAGCGCGACGAGAAAGACGACAAGATGAAGTTCCAAGAATTCAAGGTCGCACTAAGGAGTTACGAGGAAACTGAAAAATCTTGTATGCCACCTCAAACTGACGAGGACAACGTTATGAGCTGCAAACCGAAAAGCCCAGGGGCAAATGATTCCATAACGTGTTATTCCTGCGGTCAGTCAGGTCACAAGTCACCAGAGTGTCGCTCGAAGGGCAAGAAGAAGAACACTGAGAAGAAGAAAGGGAACAGATGGTGTAGCCACTGCAGGTCGAAAACTCACAATACCGACGTTTGTCGCAAGAAAGACTCTGCCAAAACCGTGAGTGATGACAAGTCTGATATAAGGGACGCttcatttgcttttaaagtGACTGTAGATAATGTTGATTCTGTAAGAGAAAACTCTTTGCTAGTTGACACTGGAGCTACTGCTCACATTCTTAATGATAATTCTAAGTTCGTAAATTTTGACGAAGATTTCAAACCTGAGAATCATTATATAGAGTTAGCAGATGGTAGTAGGGCATGTGGTGTTGTATCTGCCAAGGGCAGAGCAAAAATTATCTTACATGATGTAGGGGGTATTGCCCATGAGGTTTTTCTTGAAGGTGCTTTATATATACCTAGTTATAGACAGAATATTTTTTCTGTTCAATCAGCAATCAACAAGGGGAGTGCCATAAATTTGACACCAAATTCTGCAGAGCTGAGTGCACCAGATGGCACAAAATTTGCCATTAAGAAACATGGGAAGCTGTATTATCTCAACAGCGCAATTTCTAGCAGTGGAGCACACACTGCTGAGACATGGCACAGAATACTAGGGCATTGCAATATGAATGATGTGTTCAAACTAGAAAATGTAGTTGAAGGGATGAAGATAACGATGTGTTATGCATATGTGGAAAAGAAGACTAAATTGGATCCAAGAGCTGAGAAAGGTATTTTTGTGGGGTATGACAGGTCTAGCCCTGCATTTCTTGTCTATTACCCACAAGCAAATACTGTAAGGAAAGTCCGATGTGTCAAATTCACCGAGggttttgaaaatgttgacGAAGTTGTTGAATTGTTGCCTGATTCTGTTAAACCAGGGGAACCTGAAATACCAACCCATGGGAATGTGGATGCCAATGTTAGGCGTTACCCTGCTAGAGATCGTGCCAGACCCAAGTATCTTGATGACTATGTAACAGGGGTGGACATTGATGATGCAATTGATGATACTGCAAATTGTACAATTGATTTTTGTTACAGATTAGCCAATGTTCCCCAATCATACCAAGATGCAATCACATCCCCAGAGGCCAATAAGTGGAGGGAGGCTATGAGTGAAGAGTTAAATGCCCTATGGGATAATGAAACCTATGAACTCACCCCTCTACCAGAAGGTCGAACATCAGTGGGGGTTCGCATGCTAATGCAATTGGCTGTGCAAGAGGACATGGTAGTGCATCAGATGGACGTGAAAACGGCCTATTTGAATGCTCCTATTGACTGTGAGTTGTACATGGAACAACCTGAAGGGTATGAGAGAAAAGGCCCCAATGGTGAAAAACTTGTATGTAAACTGAAAAAGTCATTGTATGGTCTTAAACAGAGTGGTCGTAACTGGAATAACATGTTACACCATCATTTTACACAGGAAGGCTTTGTACAATCTCTAGCCGATCCATGTGTGTATGTCAGGGAAACTGAAACTGGTAAAGTTATTGCAATTGTGTGGGTTGATGACATTATTATTGCAGGTAGCAACACAGCTGTATTGAAAGGGGTAAAAGAATCCTTAATGAAGAGATTCAAAATGAAAGACCTAGGAGTATTGTCATGGTTTCTGGGCATTCAATTCAGGGGTGAAGGGGACTGTATTGAAATGAACCAAAATCAGTATGTAGAAACAATTTTATCTAAGTTCAAGATGTCAGATTGCAAGCCAAAGGGGGTCCCATCATTTGTCAAAACCATTGAAAACACATTATGGGATGGCTAA

Transcript

g11372.t1

Protein

Uniprot

Uniprot term	Description
P04146	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3
Q9ZT94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1
Q07793	Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY1B-DR4 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	Family	Interproscan
PF07727	RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR013103	Domain	Reverse transcriptase, RNA-dependent DNA polymerase	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42648	TRANSPOSASE, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan